Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M15
(797 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 135 2e-31
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 135 2e-31
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 135 2e-31
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 135 2e-31
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 135 2e-31
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 135 2e-31
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 61 5e-09
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 61 5e-09
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 61 5e-09
BC074774-1|AAH74774.2| 388|Homo sapiens FLJ13231 protein protein. 31 3.6
AK026735-1|BAB15539.1| 373|Homo sapiens protein ( Homo sapiens ... 31 3.6
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 135 bits (326), Expect = 2e-31
Identities = 65/110 (59%), Positives = 76/110 (69%)
Frame = +3
Query: 297 AMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNG 476
+MA+L QMHR GP + + P G P KGVVL T +KPKKPNSANRKC VRLS G
Sbjct: 29 SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTG 88
Query: 477 KEMVSYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVIKQ 626
+E V +IPG GH LQEH +VLV GR +D PGVKL VRGK+D HV K+
Sbjct: 89 REAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK 138
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 135 bits (326), Expect = 2e-31
Identities = 65/110 (59%), Positives = 76/110 (69%)
Frame = +3
Query: 297 AMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNG 476
+MA+L QMHR GP + + P G P KGVVL T +KPKKPNSANRKC VRLS G
Sbjct: 29 SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTG 88
Query: 477 KEMVSYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVIKQ 626
+E V +IPG GH LQEH +VLV GR +D PGVKL VRGK+D HV K+
Sbjct: 89 REAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK 138
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 135 bits (326), Expect = 2e-31
Identities = 65/110 (59%), Positives = 76/110 (69%)
Frame = +3
Query: 297 AMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNG 476
+MA+L QMHR GP + + P G P KGVVL T +KPKKPNSANRKC VRLS G
Sbjct: 29 SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTG 88
Query: 477 KEMVSYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVIKQ 626
+E V +IPG GH LQEH +VLV GR +D PGVKL VRGK+D HV K+
Sbjct: 89 REAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK 138
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 135 bits (326), Expect = 2e-31
Identities = 65/110 (59%), Positives = 76/110 (69%)
Frame = +3
Query: 297 AMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNG 476
+MA+L QMHR GP + + P G P KGVVL T +KPKKPNSANRKC VRLS G
Sbjct: 29 SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTG 88
Query: 477 KEMVSYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVIKQ 626
+E V +IPG GH LQEH +VLV GR +D PGVKL VRGK+D HV K+
Sbjct: 89 REAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK 138
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 135 bits (326), Expect = 2e-31
Identities = 65/110 (59%), Positives = 76/110 (69%)
Frame = +3
Query: 297 AMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNG 476
+MA+L QMHR GP + + P G P KGVVL T +KPKKPNSANRKC VRLS G
Sbjct: 29 SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTG 88
Query: 477 KEMVSYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVIKQ 626
+E V +IPG GH LQEH +VLV GR +D PGVKL VRGK+D HV K+
Sbjct: 89 REAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK 138
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 135 bits (326), Expect = 2e-31
Identities = 65/110 (59%), Positives = 76/110 (69%)
Frame = +3
Query: 297 AMASLAQMHRTGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNG 476
+MA+L QMHR GP + + P G P KGVVL T +KPKKPNSANRKC VRLS G
Sbjct: 29 SMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTG 88
Query: 477 KEMVSYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVIKQ 626
+E V +IPG GH LQEH +VLV GR +D PGVKL VRGK+D HV K+
Sbjct: 89 REAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK 138
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 60.9 bits (141), Expect = 5e-09
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 8/94 (8%)
Frame = +3
Query: 336 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIPGIG- 509
H+ NP G AKG+VL+ V + K+PNSA RKCV V+L NGK++ +++P G
Sbjct: 31 HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGC 90
Query: 510 -HNLQEHNVVLVR-VGR----LKDCPGVKLKCVR 593
+ ++E++ VLV GR + D PGV+ K V+
Sbjct: 91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 124
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 60.9 bits (141), Expect = 5e-09
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 8/94 (8%)
Frame = +3
Query: 336 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIPGIG- 509
H+ NP G AKG+VL+ V + K+PNSA RKCV V+L NGK++ +++P G
Sbjct: 31 HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGC 90
Query: 510 -HNLQEHNVVLVR-VGR----LKDCPGVKLKCVR 593
+ ++E++ VLV GR + D PGV+ K V+
Sbjct: 91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 124
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 60.9 bits (141), Expect = 5e-09
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 8/94 (8%)
Frame = +3
Query: 336 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIPGIG- 509
H+ NP G AKG+VL+ V + K+PNSA RKCV V+L NGK++ +++P G
Sbjct: 31 HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGC 90
Query: 510 -HNLQEHNVVLVR-VGR----LKDCPGVKLKCVR 593
+ ++E++ VLV GR + D PGV+ K V+
Sbjct: 91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 124
>BC074774-1|AAH74774.2| 388|Homo sapiens FLJ13231 protein protein.
Length = 388
Score = 31.5 bits (68), Expect = 3.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 410 YGL*NDTLSEGIPVKRIPRFPLLNVRSSSVHLGQRRHCP 294
YGL N+ LSE + + +P+ PL N + S +HCP
Sbjct: 158 YGLMNELLSESVQLPTLPQKPLPN-KPSPTQSSSCQHCP 195
>AK026735-1|BAB15539.1| 373|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23082 fis, clone LNG06451. ).
Length = 373
Score = 31.5 bits (68), Expect = 3.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 410 YGL*NDTLSEGIPVKRIPRFPLLNVRSSSVHLGQRRHCP 294
YGL N+ LSE + + +P+ PL N + S +HCP
Sbjct: 143 YGLMNELLSESVQLPTLPQKPLPN-KPSPTQSSSCQHCP 180
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,020,970
Number of Sequences: 237096
Number of extensions: 2348576
Number of successful extensions: 4817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4817
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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