Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M15
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...   111   6e-25
Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    63   3e-10
U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family...    31   1.3  
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81050-7|CAB02853.1|  154|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    29   3.9  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    29   3.9  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   6.7  
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score =  111 bits (267), Expect = 6e-25
 Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 2/97 (2%)
 Frame = +3

Query: 321 HRTGPHIKKRKSRNP--LNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVSY 494
           +R GP  ++ +S++   ++G    KG+VLKTVI+ PKKPNS NRKC +VRLS G E+ +Y
Sbjct: 53  YRNGPPKRRARSKDKSAISGYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRLSTGAEVCAY 112

Query: 495 IPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHD 605
           IP +GHNLQEH+ VLV+ GR +D   VK   VRGK+D
Sbjct: 113 IPNVGHNLQEHSQVLVKGGRRRDLISVKANIVRGKYD 149


>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 8/94 (8%)
 Frame = +3

Query: 336 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIPGIG- 509
           HI  R   NP  G   AKG+VL+ +  + K+PNSA RKCV V+L  NGK++ +++P  G 
Sbjct: 31  HIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGC 90

Query: 510 -HNLQEHNVVLVR-VGR----LKDCPGVKLKCVR 593
            + ++E++ VLV   GR    + D PGV+ K V+
Sbjct: 91  LNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 124


>U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family
           protein 1 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 339 IKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMV 488
           +K R    PLNG  FA+     T  K P+ P   +R    +  +NG E V
Sbjct: 337 VKVRAVLGPLNGELFAELPFTLTHSKPPESPERTDRGLPSIEATNGSEPV 386


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +2

Query: 482 NGVVYTRHRA*LAGTQRGPG------QSGKVKRLSRRETKVCARQARLVARHQTEGVG 637
           + V Y R +  +   +R PG       SGKV  +  R    C R AR +ARH    +G
Sbjct: 290 HNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRVMG 347


>Z81050-7|CAB02853.1|  154|Caenorhabditis elegans Hypothetical
           protein C50B6.9 protein.
          Length = 154

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 441 NRKCVLVRLSNGKEMVSYIPGIGHNLQEHNVVLVRVGRLKD 563
           N K ++ R+++  +    IPG+ HN      VL R+G+L D
Sbjct: 100 NSKKLMQRMASTYKDFHRIPGVDHNFDLDEEVLKRLGQLMD 140


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +2

Query: 482 NGVVYTRHRA*LAGTQRGPG------QSGKVKRLSRRETKVCARQARLVARHQTEGVG 637
           + V Y R +  +   +R PG       SGKV  +  R    C R AR +ARH    +G
Sbjct: 290 HNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRVMG 347


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +2

Query: 482 NGVVYTRHRA*LAGTQRGPG------QSGKVKRLSRRETKVCARQARLVARHQTEGVG 637
           + V Y R +  +   +R PG       SGKV  +  R    C R AR +ARH    +G
Sbjct: 290 HNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRVMG 347


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 381  FAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVSY 494
            FA   +L+T+ K+P  PN+  +K +L+  +     + Y
Sbjct: 2602 FALWGMLRTIAKRPTDPNNKRKKVILLNCATPWRTIEY 2639


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 381  FAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVSY 494
            FA   +L+T+ K+P  PN+  +K +L+  +     + Y
Sbjct: 2613 FALWGMLRTIAKRPTDPNNKRKKVILLNCATPWRTIEY 2650


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 381  FAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVSY 494
            FA   +L+T+ K+P  PN+  +K +L+  +     + Y
Sbjct: 2613 FALWGMLRTIAKRPTDPNNKRKKVILLNCATPWRTIEY 2650


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 381  FAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVSY 494
            FA   +L+T+ K+P  PN+  +K +L+  +     + Y
Sbjct: 2613 FALWGMLRTIAKRPTDPNNKRKKVILLNCATPWRTIEY 2650


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 333 PHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRK 449
           P  KK+KS+ P       + V +K + K  KKP    R+
Sbjct: 189 PKKKKKKSKKPKKAPKSDEEVTIKIIKKPKKKPEDLERR 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,677,196
Number of Sequences: 27780
Number of extensions: 371950
Number of successful extensions: 1051
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)