Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M11
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 221 1e-58
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 111 9e-26
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 108 1e-24
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 107 2e-24
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 107 3e-24
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 94 2e-20
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 93 3e-20
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 91 1e-19
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 90 4e-19
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 90 4e-19
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 87 3e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 86 5e-18
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 85 2e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 85 2e-17
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 83 5e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 80 4e-16
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 79 1e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 77 4e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 66 6e-12
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 59 9e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 55 1e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 53 4e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 50 3e-07
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 31 0.20
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 31 0.27
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.81
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.5
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 5.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 7.6
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 221 bits (540), Expect = 1e-58
Identities = 104/161 (64%), Positives = 127/161 (78%)
Frame = +3
Query: 342 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 521
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 522 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTXELALQTSQICIEL 701
PIALSG+D+LARAKNGTGKT A+ IP LE+VD KK IQ LI+VPT ELALQTSQ+C L
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTL 135
Query: 702 AKHTDIRVMVTTGGTNLRXDIMRIYQNVQVIIATPGRMIDL 824
KH +++VMVTTGGT LR DI+R+ V +++ TPGR++DL
Sbjct: 136 GKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDL 176
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 111 bits (268), Expect = 9e-26
Identities = 57/147 (38%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Frame = +3
Query: 396 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 575
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 576 KTGAYCIPVLEQV--DPKK-DTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGT 746
KT A+ +P+LE++ PKK T + LI+ PT ELA+Q + ++A TDI V + GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGL 368
Query: 747 NLRXDIMRIYQNVQVIIATPGRMIDLM 827
+L+ + + ++IATPGR ID M
Sbjct: 369 SLKLQEQELRKRPDIVIATPGRFIDHM 395
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 108 bits (259), Expect = 1e-24
Identities = 53/132 (40%), Positives = 82/132 (62%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 611
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTGKT + I VL++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 612 VDPKKDTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQV 791
+D QALI+ PT ELA Q ++ + L ++ GGT +R D+ + V V
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 792 IIATPGRMIDLM 827
++ TPGR+ D++
Sbjct: 141 VVGTPGRVHDMI 152
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 107 bits (257), Expect = 2e-24
Identities = 51/134 (38%), Positives = 81/134 (60%)
Frame = +3
Query: 426 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 605
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTGKT + I +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 606 EQVDPKKDTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNV 785
+ +D QALI+ PT ELA+Q + + L H +++ GGT++ DI ++
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ 140
Query: 786 QVIIATPGRMIDLM 827
V+ TPGR+ D++
Sbjct: 141 HVVSGTPGRVTDMI 154
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 107 bits (256), Expect = 3e-24
Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Frame = +3
Query: 264 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 443
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 444 CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP- 620
L + LL IF+KG++ P+PIQ +IP+ L G+DV+ A+ G+GKT A+ IP++E +
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST 134
Query: 621 -KKDTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVII 797
+ALI+ P ELALQT ++ + +K TD+R + GG +L + +++
Sbjct: 135 LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVV 194
Query: 798 ATPGRMIDL 824
ATPGR + L
Sbjct: 195 ATPGRFLHL 203
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 94.3 bits (224), Expect = 2e-20
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 611
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + + L+Q
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 612 VDPKKDTIQALIVVPTXELALQTSQICIELAKH-TDIRVMVTTGGTNLRXDIMRI---YQ 779
++P + L++ T ELA Q +K+ D+R V GG N++ D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 780 NVQVIIATPGRM 815
+ +++ATPGR+
Sbjct: 173 SPHIVVATPGRL 184
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 93.5 bits (222), Expect = 3e-20
Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 611
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+GKT +YC+P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 612 VDPKK-----DTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIY 776
++ + D L++ PT ELA+Q Q C + K + IR GG I +
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 777 QNVQVIIATPGRMIDLMD 830
+ V++ IATPGR++D++D
Sbjct: 244 RGVEICIATPGRLLDMLD 261
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 91.5 bits (217), Expect = 1e-19
Identities = 65/205 (31%), Positives = 113/205 (55%), Gaps = 10/205 (4%)
Frame = +3
Query: 243 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 416
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 417 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTG 575
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 576 KTGAYCIPVLEQVDPKKDTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLR 755
KT A+ + +L +VD QA+ + P+ ELA Q + E+ K+T+++ T G ++
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK---TAFG--IK 220
Query: 756 XDIMRIYQ-NVQVIIATPGRMIDLM 827
+ + + + Q++I TPG ++DLM
Sbjct: 221 DSVPKGAKIDAQIVIGTPGTVMDLM 245
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 89.8 bits (213), Expect = 4e-19
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
Frame = +3
Query: 381 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 560
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 561 KNGTGKTGAYCIPVLEQV-----DPKKDTIQALIVVPTXELALQTSQICIELAKHTDIRV 725
K G+GKT A+ IP +E + P+ T +I+ PT ELALQ + EL K+
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKPRNGT-GVIIISPTRELALQIFGVAKELLKYHHQTF 192
Query: 726 MVTTGGTNLRXDIMRIYQNVQVIIATPGRMID 821
+ GG N R + ++ + V +++ATPGR++D
Sbjct: 193 GIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 89.8 bits (213), Expect = 4e-19
Identities = 50/137 (36%), Positives = 85/137 (62%), Gaps = 3/137 (2%)
Frame = +3
Query: 429 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 608
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+GKT A+ IP L+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 609 QVD---PKKDTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQ 779
++ K + L+V PT ELA+QT + L + T+++ +V GG + + R +
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAK 284
Query: 780 NVQVIIATPGRMIDLMD 830
N VII TPGR++DL++
Sbjct: 285 NASVIIGTPGRLLDLIN 301
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 87.0 bits (206), Expect = 3e-18
Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = +3
Query: 441 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP 620
F L E+L + + G+ KP PIQ IP A G D++ +A G+GKT A+ IP+LE
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 621 KKDT--IQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVI 794
D +QAL+V PT ELA Q Q + +IRVM TGG ++ + ++ V+
Sbjct: 187 NVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVV 246
Query: 795 IATPGRM 815
+ATPGR+
Sbjct: 247 VATPGRL 253
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 86.2 bits (204), Expect = 5e-18
Identities = 43/143 (30%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Frame = +3
Query: 414 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 581
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 582 GAYCIPVLEQVDPKKDTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXD 761
A+ +PV++++ A+++ PT ELA Q S+ + +R +V GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 762 IMRIYQNVQVIIATPGRMIDLMD 830
+ + + V++ TPGR++D ++
Sbjct: 158 AVALSKKPHVLVCTPGRLMDHLE 180
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 84.6 bits (200), Expect = 2e-17
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE- 608
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+GKT AY IP+LE
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 609 -----QVDPKKDTIQALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMR- 770
Q+D + I AL++VPT ELA Q + +L + TN + R
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 771 -IYQNVQVIIATPGRMI 818
+ ++IATP R +
Sbjct: 136 LLLDLPDIVIATPSRCV 152
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 84.6 bits (200), Expect = 2e-17
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Frame = +3
Query: 447 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 626
L + + I G+EKP+ IQ +IP SG+DV+ AK G+GKT A+ +P+ + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 627 DTIQ-----ALIVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQV 791
A+I+ PT ELA+Q + C K +IR GG ++ I + + ++
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 792 IIATPGRMIDLM 827
++ TPGRMID++
Sbjct: 545 VVCTPGRMIDVL 556
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 83.0 bits (196), Expect = 5e-17
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 18/153 (11%)
Frame = +3
Query: 426 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 605
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+GKT + P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Query: 606 E----------QVD--------PKKDTIQALIVVPTXELALQTSQICIELAKHTDIRVMV 731
VD P+K LI+ PT EL Q + + + +R
Sbjct: 229 SLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 732 TTGGTNLRXDIMRIYQNVQVIIATPGRMIDLMD 830
GG ++R I +I Q ++ ATPGR++DL+D
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVDLID 321
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 79.8 bits (188), Expect = 4e-16
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Frame = +3
Query: 342 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 491
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 492 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPV---LEQVDPKKDTIQ-----ALI 647
+PS IQ A+IP+ L KD++ A+ G+GKT A+ IP+ + ++ P ++ A++
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
Query: 648 VVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVIIATPGRMIDLM 827
+ PT ELA Q + A+ R + GG ++ Q +++ATPGR++D +
Sbjct: 331 LAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL 390
Query: 828 D 830
+
Sbjct: 391 E 391
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 78.6 bits (185), Expect = 1e-15
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Frame = +3
Query: 504 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTXELA 671
IQ+ IP AL G+D+L AK G+GKT A+ +P++E + KK D + AL++ PT ELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 672 LQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVIIATPGRMIDLMD 830
+QT + +++ + + GG N + + R+ + +++ TPGR++ +D
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQHID 176
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 76.6 bits (180), Expect = 4e-15
Identities = 37/112 (33%), Positives = 65/112 (58%)
Frame = +3
Query: 492 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTXELA 671
+P+ IQE I L G++ + AK G+GKT A+ +P++E+ I ALI+ PT ELA
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88
Query: 672 LQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVIIATPGRMIDLM 827
+Q + L + +++ + GG ++ + + + V++ATPGR+ DL+
Sbjct: 89 IQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLI 140
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 66.1 bits (154), Expect = 6e-12
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 611
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+GKT AY +P ++
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 612 V---DPKKDTIQALIVVPTXELALQTSQICIELAKHTD---------IRVMVTTGGTNLR 755
V D + + ALIV PT ELA Q + EL + + M G L
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 756 XDIMRIYQ-NVQVIIATPGRMIDLM 827
D+ + N V+I TPGR+ +++
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEML 147
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 58.8 bits (136), Expect = 9e-10
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Frame = +3
Query: 483 GWEKPSPIQEASI-PIALSGKDVLARAKNGTGKTGAYCIPVLEQV---DPKKDT--IQAL 644
G+EK +P+Q+ + + + ++ + +AK GTGKT A+ + + V P+ ++ I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 645 IVVPTXELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQ-NVQVIIATPGRMID 821
I+ PT ELALQ + +L T IRV GG + + I + N ++IATPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 54.8 bits (126), Expect = 1e-08
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Frame = +3
Query: 495 PSPIQEASIPIALS--GKDVLARAKNGTGKTGAYCIPVLEQVD--PKK-----DTIQALI 647
P+ IQ +P L+ KD A+ G+GKT AY +P+++++ PK I A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 648 VVPTXELALQTSQICIELAKHTDIRVMVT---TGGTNLRXDIMRIYQNVQVIIATPGRMI 818
+ PT EL Q + +L + +V+ GG + + RI + V ++I TPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLA 281
Query: 819 DLMD 830
D ++
Sbjct: 282 DHLE 285
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 53.2 bits (122), Expect = 4e-08
Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Frame = +3
Query: 522 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK-DTIQALIVVPTXELALQTSQICIE 698
P+ G DV A G+GKT +Y IP+++ + + ++ +++VPT EL +Q ++
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 699 LAKHTDIRVMVTTGGTNLRXDIMRIYQN-----VQVIIATPGRMID 821
++V TG +LR + ++ + + V+++TPGR++D
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVD 273
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 50.4 bits (115), Expect = 3e-07
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Frame = +3
Query: 504 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVD-PKKDTIQALIVVPTXELALQT 680
IQ +IP S +D+LA A G+GKT AY P+L+++ +A+IV PT EL Q
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 681 SQICIELAKHTDIRVM-VTTGGTNLRXDIMRIYQNVQVIIATPGRMI 818
+ +L+ T ++++ ++ ++ ++ + + I TP R++
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLV 178
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 31.1 bits (67), Expect = 0.20
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Frame = +3
Query: 447 LKRELLMGIF-EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPK 623
L +EL+ ++ + EK Q +I +G V+ +GK+ Y IP+L+ + +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 624 KDTIQALIVVPTXELALQTSQICIELAKH----TDIRVMVTTGGTNLRXDIMRIYQNVQV 791
+ A V PT LA + I++ + +IRV G T L I ++ +
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLE-SRESIIRSANI 412
Query: 792 IIATP 806
I P
Sbjct: 413 IFTNP 417
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 30.7 bits (66), Expect = 0.27
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 746 CASCSNHYTNVCVFCQFNTN 687
CA C NH ++C+ CQ NT+
Sbjct: 41 CAICRNHIMDLCIECQANTD 60
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.81
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -2
Query: 739 PVVTITRMSVCFASSIQICDVWSANSXVGTTIKACIVSFLGSTCSKTGIQ*APVLPV-PF 563
P+ ++ + ASS + V SANS T+ + +S + ST + T P+ V
Sbjct: 307 PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNST-TATSASSTPLTSVNST 365
Query: 562 LALASTSFPLRAI----GIEAS*IGDGFSHPFSKIPINNSRFKQNSSNSLPLVSVTS 404
A +++S PL ++ AS ++ + ++++ N+S+ LP SV+S
Sbjct: 366 TATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 767 AYLSKCTSDYCHTWAY 814
A L++CT DY H+W Y
Sbjct: 3007 ALLNRCTIDYYHSWDY 3022
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 788 LYILINTHYIXSKVCASCSNHYTNVCVFCQFN 693
+Y LI+ + +C+ H VC+FC F+
Sbjct: 222 VYGLISLWWAIRCICSRTKLHLVQVCLFCWFS 253
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 273 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 419
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,673
Number of Sequences: 5004
Number of extensions: 56648
Number of successful extensions: 198
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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