Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M09
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       46   4e-05
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    40   0.002
01_06_1306 + 36151907-36154369                                         31   1.2  
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581...    31   1.5  
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974...    30   2.7  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/36 (58%), Positives = 24/36 (66%)
 Frame = +1

Query: 106 NITMRGHVPKTPKEKAAQYPVAPWLLALFIFVVCGS 213
           NIT RG VP+T  +K   YPV P +L  FIFVV GS
Sbjct: 18  NITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGS 53


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 106 NITMRGHVPKTPKEKAAQYPVAPWLLALFIFV 201
           NIT RG VP+T  +K   YPV P +L  FIFV
Sbjct: 18  NITKRGSVPETTVKKGNDYPVGPLVLGFFIFV 49


>01_06_1306 + 36151907-36154369
          Length = 820

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 111 HNAGACPQNSQGKSSPISCGTLAPCSLHLRSVWLCCVPXNPI 236
           ++ G+  ++  G S+  SC +L+PC+    S  L  VP  P+
Sbjct: 153 YSGGSSVESPDGSSAANSCNSLSPCNCSSSSDGLGAVPQTPV 194


>01_01_0753 -
           5814087-5814344,5814461-5814646,5814847-5815004,
           5815082-5815214,5815299-5815489,5815826-5816281,
           5816543-5816661,5816729-5816872,5816994-5817065,
           5817368-5817500,5817598-5817733
          Length = 661

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 204 HYEDEESKEPGC-HRILGCFFLGSFGDMPPH 115
           H +D   ++ GC  R LGC+++G FG   PH
Sbjct: 177 HIQDISDEQAGCLSRKLGCWYVGYFGLGEPH 207


>05_03_0318 -
           12292969-12293222,12293305-12293898,12297102-12297415,
           12297712-12297893,12297960-12298187,12298234-12298698,
           12299393-12299443
          Length = 695

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 216 CVPXNPINKXSLNHEDNWRTAIENTIK*QHYPSKV-RHNLHQHLFVDMRE 362
           CV     +  S+   D W+T + N  + + Y S + RH+L Q  F+++ E
Sbjct: 206 CVEGKAKDARSITSGDGWKTRVLNRKEVRSYTSDLKRHDLRQQDFLNLEE 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,449,311
Number of Sequences: 37544
Number of extensions: 387904
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)