Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M09
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           31   1.6  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  29   3.6  
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 79  VSPTRLASXNITMRGHVPKTPKEKAAQYPVAPWLLALFIFVVCGSAVFQXIQS 237
           +SP  LA+ N    G  P+   ++  +  + P     F++++ G+AVFQ I+S
Sbjct: 123 LSPQPLANQNKRFMGKSPRIGPKRPDE-KLTPRTTLFFVYLLFGAAVFQTIES 174


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = +3

Query: 45   SQXKMAPQQRXRLANASRQXKHHNAGACPQNSQGKSSPISCGTLAPCSLHLRSVWLCCVP 224
            +Q    PQQ  R A+A      HN+ A  Q++QG +S +   TL P +   R++    + 
Sbjct: 1084 AQSANMPQQP-RYASAQSGNDKHNSSAMAQSAQGHNSQVKIPTL-PIANGFRALDERVMS 1141

Query: 225  XNPINKXSLNHEDNWRTAIE 284
             +P  K S +++   R  +E
Sbjct: 1142 DSPEYKASNDNDTPGRYFVE 1161


>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 171 CHRILGCFFLGSFGDMPPHCDVXTGETRWRD 79
           C R     F G  G+   H  + TGETRW D
Sbjct: 4   CERQKWLPFFGELGETLGHRHIVTGETRWID 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,128,549
Number of Sequences: 59808
Number of extensions: 460318
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)