Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M09
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical ...    61   1e-09
Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z81130-7|CAE17967.1|  199|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   7.3  

>AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical
           protein T09A12.5 protein.
          Length = 63

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 25/47 (53%), Positives = 35/47 (74%)
 Frame = +1

Query: 100 SXNITMRGHVPKTPKEKAAQYPVAPWLLALFIFVVCGSAVFQXIQSI 240
           S N+T RG+VPK  K   +++P + WL+ LFIFVVCGSA+F+ I+ I
Sbjct: 15  SKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRYI 61


>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 25/49 (51%), Positives = 35/49 (71%)
 Frame = +1

Query: 100 SXNITMRGHVPKTPKEKAAQYPVAPWLLALFIFVVCGSAVFQXIQSIXL 246
           S N+  RG+V K+ K    +YP APWL+ LF+FVVCGSAVF+ I+ + +
Sbjct: 15  SKNVNNRGNVAKSLKPAEDKYPAAPWLIGLFVFVVCGSAVFEIIRYVKM 63


>Z81130-7|CAE17967.1|  199|Caenorhabditis elegans Hypothetical
           protein T23G11.10 protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 71  AXASRQRVSPVKTSQCGGMSPKLPRKKQPNILWHP 175
           A  +++R  PVKT + GG+ PK    K  ++ W P
Sbjct: 135 AEIAKERFGPVKTLKMGGVFPK---NKANSVFWSP 166


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 198 RSVWLCCVPXNPINKXSLNHEDNWRT 275
           RS+W CC+P    N  S   +  WRT
Sbjct: 275 RSMWSCCIPTTYYNNYSNALKIAWRT 300


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +3

Query: 213 CCVPX--NPINKXSLNHEDNWRTA 278
           CC P   N +N  S+ H  NWRTA
Sbjct: 136 CCFPEVVNYLNTHSVGHVKNWRTA 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,252,964
Number of Sequences: 27780
Number of extensions: 362848
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)