Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M08
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   2e-21
SB_37097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 42/59 (71%), Positives = 52/59 (88%)
 Frame = +2

Query: 26   YTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSK 202
            YTEDQVVS+DFIG+  SS+FDA AGI LND FVKL++WYDNEYGYS RV+DL++Y+ S+
Sbjct: 1050 YTEDQVVSTDFIGERVSSVFDARAGIQLNDKFVKLVTWYDNEYGYSHRVVDLMRYMASR 1108


>SB_37097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = +2

Query: 5   RPIAFSRYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI--- 175
           RP +F+      +V    +   H ++       SL D+F+KL++ +++    S  V    
Sbjct: 550 RPTSFNADFYSDLVDQGILNQQHHNV-------SLTDDFLKLVTTFNDGRQQSDLVASVV 602

Query: 176 ---DLIKYIQSKD*TLDQM 223
              D++K IQSK+  LD M
Sbjct: 603 ERPDVLKRIQSKEAPLDIM 621


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = +2

Query: 5    RPIAFSRYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLI 184
            R +A  + T+D+  + + IGDS  S+ +     S+ + F  L   +   YG S  VI  I
Sbjct: 1959 RCVAEQKQTDDKSDNLETIGDSVKSLINQMKPFSV-EEFHDLTKQFGFSYGPSFSVIKHI 2017

Query: 185  KYIQSKD*TLDQMYECKDIFQH 250
               +S+   L Q+ E     QH
Sbjct: 2018 WKGESEGLCLIQLEETLSKEQH 2039


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,113,104
Number of Sequences: 59808
Number of extensions: 190876
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)