Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M07
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   1e-27
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_30266| Best HMM Match : Fzo_mitofusin (HMM E-Value=1.2)             31   0.65 
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)                  29   2.6  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 29   4.6  
SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     28   6.1  
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)            28   6.1  
SB_39029| Best HMM Match : ig (HMM E-Value=6e-10)                      28   6.1  
SB_47850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score =  120 bits (289), Expect = 1e-27
 Identities = 56/137 (40%), Positives = 87/137 (63%)
 Frame = +1

Query: 166 VDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHGEY 345
           + + +    Q VE Q+D+E+ RL+ +   +LE +R++R+ +MK   +QKQEW+  GHG Y
Sbjct: 5   IGRTVLQATQMVEEQVDAELNRLEKMTGDELEELREKRMQQMKKMQQQKQEWVHKGHGTY 64

Query: 346 TEIDGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPF 525
           +EI  E +FF +   S  +V HFY+ ++ RCKIVD HL +LA KH+ET+FVK+D    P 
Sbjct: 65  SEIPSEPDFFPMTKDSPRLVVHFYRDETFRCKIVDKHLALLAPKHMETKFVKID----PT 120

Query: 526 LTGRLKIRVIPTLGLVK 576
                 +++I T  L+K
Sbjct: 121 KRAASSVKIIYTKKLLK 137


>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +1

Query: 103 FDKTHYLNQYKSS*KLNTMANVDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRI 282
           FDKT +    +        ++  +LL+ V ++   Q+D ++E+   LES  LE +R  RI
Sbjct: 642 FDKTGFFKPLRDERSSRQKSSAGRLLEQVRRSAALQVDEDVEQESGLES-RLERVR--RI 698

Query: 283 AE 288
           A+
Sbjct: 699 AQ 700


>SB_30266| Best HMM Match : Fzo_mitofusin (HMM E-Value=1.2)
          Length = 1052

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
 Frame = +3

Query: 288 NEVKSKAETRVVGHWSRRIHRDRWRE-RVLCCLQ*KSECRVPFLQVGLAPLQDRGHAPQD 464
           +EV S A+T    H SRR+ +D W + R +  L+ +   +   L+     LQ+   A  +
Sbjct: 353 DEVDSLAKTEK--HSSRRVEKDMWEQARKVNELKRQVNVKGWLLEKETKLLQELESAVFN 410

Query: 465 LGQEAHRDEVREVGRGESAVSDR--SA*NTRDPNPRTSEGQQD*RLHSRFH 611
             ++  R ++R   RG+S  ++R  +   + DP    SE  +  R  SR H
Sbjct: 411 EFRKDVRKKLRRHSRGQSGYANRGETGKKSHDPRRAMSEQVKGSRSRSRLH 461


>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 151 NTMANVDQLLQHVAQNVE--RQIDSEIERL-DALESGDLEAIRQQRIAEMKLRAKQKQEW 321
           + MA+ DQL  HV Q ++  + +  +I ++ + L  GDL  +R+Q +    L    K + 
Sbjct: 244 SAMASQDQLQDHVGQTIKEIKHLRMKIHKVSEVLCHGDLNLLRKQSLRSKYLSVYDKLKL 303

Query: 322 LAIGH 336
           +A  H
Sbjct: 304 MATVH 308


>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
          Length = 394

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 444 RGHAPQDLGQEAHRDEVREVGRGESAVSDRSA*NTRDPNPRTSEGQQD 587
           +G  P++  +   RD+  +  R + A  +R A   R+ + RT   QQ+
Sbjct: 233 QGRGPRETSKRTKRDQQEDQERDQHADQERPARGPRETSKRTKRDQQE 280


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = +1

Query: 361 EKEFFAVCNKSQNVVCHFYKSDSPRCK-IVDMHLKI---LAKKHIETRFVKLDVERAPFL 528
           EK F      +++V+  FY      CK +   + K    L  +  E +  K+D      L
Sbjct: 31  EKNFDEAVAANKHVLVEFYAPWCGHCKALAPEYAKAAGQLKSEKSEIKLAKVDATAETKL 90

Query: 529 TGRLKIRVIPTLGLVKDNKTKDFIVGFT 612
             + +++  PT+   KD K  ++  G T
Sbjct: 91  GEKFQVQGYPTIKFFKDGKPSEYAGGRT 118


>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 271 QQRIAEMKLRAKQKQEWLAIGHGEYTEIDGEKEFFAVCNKSQNV 402
           ++ + EMK   KQ Q+ +   +GE+   D EK   A+  K + V
Sbjct: 277 EEALEEMKQTIKQTQDRMMFSYGEFKAEDQEKMLAALNKKVEEV 320


>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 400 VVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLGLVKD 579
           VV  F  S    CK +      L++K+ +  F+K+DV+    L  +  +  +PT    K 
Sbjct: 30  VVADFTASWCGPCKSIAPVYSGLSEKYKQAVFLKIDVDVCQELAAKQGVTAMPTFQFFK- 88

Query: 580 NKTK 591
           NK K
Sbjct: 89  NKVK 92


>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
          Length = 215

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 367 EFFAVCNKSQNV--VCHFYKSDSPRCKIVDMHLKILAKKHIETRFVK 501
           +F  + + S NV  V HF+   +P C  ++  L+ LAK++    F+K
Sbjct: 11  DFDRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAKENPHVNFIK 57


>SB_39029| Best HMM Match : ig (HMM E-Value=6e-10)
          Length = 439

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 442 SCSGASPTCRNGTRHSDFYCKQQRTLSLHRSLCILRDQWPTTLVSALLLT 293
           +C G++P       HS ++  Q+R    +  + +  DQW  T+ S + LT
Sbjct: 77  TCIGSNPL--GNASHSFYFTVQERQWDFNPIIQMHADQWNATIFSNITLT 124


>SB_47850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +3

Query: 300 SKAETRVVGHWSRRIHRDRWRERVLCCLQ*KSECRVPFLQVGL-APLQDRGHAPQDLGQE 476
           ++ ET   G +   +H     +  LCC + +    +P     + A + D G   QD  Q+
Sbjct: 61  NRDETVGEGLYRCLLHFQHSVKMFLCCKREEMHAGMPRAPFPVEAAVDDAGEQGQDDAQK 120

Query: 477 AHRDEVREVGRGESAVSDRSA*NTRDPN 560
             RD +  +  G+S   D     TR P+
Sbjct: 121 KFRDLLMRLRTGDSTEEDWQLLLTRQPS 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,253,056
Number of Sequences: 59808
Number of extensions: 422889
Number of successful extensions: 1198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)