Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M04
(577 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 318 8e-86
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 222 5e-57
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 219 3e-56
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 184 1e-45
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 184 1e-45
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 173 2e-42
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 150 3e-35
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 140 3e-32
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 126 5e-28
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 120 3e-26
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 116 4e-25
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 113 2e-24
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 110 3e-23
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 109 5e-23
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 109 6e-23
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 104 2e-21
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 103 2e-21
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 103 3e-21
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 102 5e-21
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 97 3e-19
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 2e-18
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 94 2e-18
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 93 3e-18
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 86 5e-16
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 86 6e-16
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 83 3e-15
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 81 1e-14
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 80 3e-14
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 78 2e-13
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 78 2e-13
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 6e-11
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 4e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 6e-10
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 1e-09
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 61 2e-08
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 56 5e-07
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 4e-06
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 53 6e-06
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 52 1e-05
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 50 4e-05
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 49 7e-05
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 49 9e-05
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 48 2e-04
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 48 2e-04
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 47 4e-04
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 45 0.001
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 45 0.001
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 44 0.002
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 44 0.003
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 44 0.003
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 42 0.010
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 42 0.010
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 42 0.010
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 42 0.010
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 41 0.018
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 40 0.042
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 39 0.097
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 38 0.17
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.17
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.22
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.52
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 36 0.52
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 36 0.52
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 0.90
UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1; Neoricke... 35 1.2
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 1.6
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 2.1
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 33 6.4
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 6.4
UniRef50_Q2RZ88 Cluster: Putative uncharacterized protein; n=1; ... 32 8.4
UniRef50_Q225J0 Cluster: Putative uncharacterized protein; n=1; ... 32 8.4
UniRef50_Q6FX91 Cluster: Candida glabrata strain CBS138 chromoso... 32 8.4
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 318 bits (780), Expect = 8e-86
Identities = 158/178 (88%), Positives = 166/178 (93%)
Frame = +1
Query: 43 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 222
MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 223 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 402
GEKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRAC
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 403 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
YGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFV GLMIHSGDP N YV+TA HVLL
Sbjct: 120 YGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLL 177
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 222 bits (542), Expect = 5e-57
Identities = 104/173 (60%), Positives = 131/173 (75%)
Frame = +1
Query: 58 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 237
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 238 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 417
RI ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 418 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
F M +GA+G EVV+SGKLR RAKS K+ G MIHSG P D+++ A HVL+
Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLM 178
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 219 bits (536), Expect = 3e-56
Identities = 105/170 (61%), Positives = 134/170 (78%)
Frame = +1
Query: 58 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 237
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 238 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 417
RIRELT+ +Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 418 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXH 567
++MESGA+GCEV + GK++GQRAKSM F G MI SG +V+TAT H
Sbjct: 176 YVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRH 225
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 184 bits (449), Expect = 1e-45
Identities = 81/171 (47%), Positives = 124/171 (72%)
Frame = +1
Query: 58 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 237
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 238 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 417
+ +ELT +QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++
Sbjct: 78 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 137
Query: 418 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHV 570
+++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A HV
Sbjct: 138 SVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHV 188
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 184 bits (448), Expect = 1e-45
Identities = 83/176 (47%), Positives = 119/176 (67%)
Frame = +1
Query: 43 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 222
M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 223 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 402
GRR++E+ ++QKR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAA 120
Query: 403 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHV 570
Y ++RF+M++GARGCEV +SGKLRG RA + K+ G M+ SGD +V A H+
Sbjct: 121 YSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHI 176
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 173 bits (421), Expect = 2e-42
Identities = 102/175 (58%), Positives = 116/175 (66%)
Frame = +1
Query: 49 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 228
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 229 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 408
KG++I+ELTSVVQKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 62 KGKKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM------ 115
Query: 409 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVL 573
L QRAKSMKF G +I SG P DY++ A HVL
Sbjct: 116 --------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHVL 150
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 150 bits (363), Expect = 3e-35
Identities = 67/161 (41%), Positives = 106/161 (65%)
Frame = +1
Query: 73 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 252
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 253 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 432
+ +R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 433 GARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNT 555
A+GC+++VSGKL+GQRAKS+KF G++IHSGD DY+NT
Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINT 181
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 140 bits (338), Expect = 3e-32
Identities = 77/131 (58%), Positives = 90/131 (68%)
Frame = +1
Query: 184 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 363
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 364 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCND 543
+KL+GGL VRRA YGVL F+MESG +GCEV + +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEV----------------IGWYIISSGQPVKD 204
Query: 544 YVNTATXHVLL 576
Y+N+ HVLL
Sbjct: 205 YINSVVRHVLL 215
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 126 bits (303), Expect = 5e-28
Identities = 66/170 (38%), Positives = 101/170 (59%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
ELT +++K+F + +E+ E++ L A QA L L G+ RRA Y LR IM
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIM 121
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
+GARG E+ +SGKL G+RAKS++F G + G+P V+ LL
Sbjct: 122 NNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALL 171
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 120 bits (288), Expect = 3e-26
Identities = 58/166 (34%), Positives = 98/166 (59%)
Frame = +1
Query: 73 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 252
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 253 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 432
++ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135
Query: 433 GARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHV 570
GA GCEV+V+GKLR QRA++ KF G +I +G P ++ AT H+
Sbjct: 136 GAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHI 181
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 116 bits (279), Expect = 4e-25
Identities = 59/162 (36%), Positives = 98/162 (60%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
+LT V ++++ ++ A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVN 552
+GA GCEVV+SGKL G R++ KFV G + HSG+P + V+
Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVD 163
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 113 bits (273), Expect = 2e-24
Identities = 59/161 (36%), Positives = 94/161 (58%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
+LT + ++I VE+ ++V A AE L L G R+A +R IM
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYV 549
ESGA GCEV+V+GKL G R+++ KF G + H G+P V
Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIV 162
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 110 bits (264), Expect = 3e-23
Identities = 60/170 (35%), Positives = 97/170 (57%)
Frame = +1
Query: 40 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 219
+M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 220 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 399
+G +GR IR + VQ+RF + + V + +++ + L A L L G+ RRA
Sbjct: 62 IGRRGRNIRRVEEEVQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRA 120
Query: 400 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYV 549
YG LR IM +GA+G +++SGKL G RA++ KF+ G + + G+P ++Y+
Sbjct: 121 AYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 109 bits (262), Expect = 5e-23
Identities = 55/166 (33%), Positives = 103/166 (62%)
Frame = +1
Query: 58 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 237
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 238 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 417
IR++T+ ++ RFN+ + V++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 418 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNT 555
IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++
Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDS 164
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 109 bits (261), Expect = 6e-23
Identities = 64/178 (35%), Positives = 102/178 (57%)
Frame = +1
Query: 43 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 222
M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 223 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 402
G +G+ I+++T V+++ F IP V + KV L A A L L G RRA
Sbjct: 61 GRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAA 118
Query: 403 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
Y LR IM +GA G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL
Sbjct: 119 YTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLL 176
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 104 bits (249), Expect = 2e-21
Identities = 50/162 (30%), Positives = 90/162 (55%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
ELT + +++ +E+ ++V L + L G+ R+ + +R +M
Sbjct: 63 ELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVM 120
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVN 552
SGA+G ++VSGKL G+R+++ KF+ G M H G+P VN
Sbjct: 121 GSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVN 162
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 103 bits (248), Expect = 2e-21
Identities = 59/169 (34%), Positives = 91/169 (53%)
Frame = +1
Query: 70 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 249
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 250 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 429
+ V+++ F I +++ +V + L A A + L+ G+ RRA L IM
Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123
Query: 430 SGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
+GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL
Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLL 172
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 103 bits (247), Expect = 3e-21
Identities = 54/170 (31%), Positives = 95/170 (55%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
+T ++ +F++ VE+ ++V L A + L G+ RR Y +R IM
Sbjct: 63 AITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
+GA+G EV +SGK+RG R+ + KF G + G+P +V V L
Sbjct: 121 AAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQL 170
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 102 bits (245), Expect = 5e-21
Identities = 59/161 (36%), Positives = 91/161 (56%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
LT + K F I V + ++V A A L L G RRA Y L IM
Sbjct: 64 ALTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYV 549
E+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V
Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMV 161
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 96.7 bits (230), Expect = 3e-19
Identities = 45/63 (71%), Positives = 51/63 (80%)
Frame = +1
Query: 388 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXH 567
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF G MI SG+P DY+ + T H
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 568 VLL 576
LL
Sbjct: 90 ALL 92
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 2e-18
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1
Query: 61 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 231
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/52 (63%), Positives = 39/52 (75%)
Frame = +1
Query: 421 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
+ ESGA+G E +VSGKL+GQRAKS KFV MIHS D N YV+T+ HVLL
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLL 131
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 94.3 bits (224), Expect = 2e-18
Identities = 54/170 (31%), Positives = 89/170 (52%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
+L + +K F + ++ ++ V L A A L L G RRA + +R IM
Sbjct: 65 QLAQIFEKVFGL--ENPQITITNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIM 122
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
+GA G E+++SGKL +RA+ K G++ SG ++ A +L
Sbjct: 123 NAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAML 172
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 93.5 bits (222), Expect = 3e-18
Identities = 57/170 (33%), Positives = 87/170 (51%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
+L V++K F + + + A + L A A L L G RRA + +R IM
Sbjct: 65 QLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
SGA G EV+VSGKL +RAK K G + SG ++ A +L
Sbjct: 123 SSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAML 172
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 86.2 bits (204), Expect = 5e-16
Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%)
Frame = +1
Query: 70 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 249
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 250 LTSVVQKRFNIPEQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
+++++ + + +++ K+ + A + + G+ RR + +R +M
Sbjct: 72 ISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLM 131
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
E+GA+G E+VVSGKL +RA+ K G + G + V A HVLL
Sbjct: 132 EAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLL 181
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 85.8 bits (203), Expect = 6e-16
Identities = 53/170 (31%), Positives = 86/170 (50%)
Frame = +1
Query: 67 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 246
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 247 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 426
+L +++Q F + ++V + V L A A + L + RR +LR +M
Sbjct: 67 KLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVM 124
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
E+GA G E+++SGKLR +RA+ K G + +GD + V+ A LL
Sbjct: 125 EAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALL 174
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 83.4 bits (197), Expect = 3e-15
Identities = 42/157 (26%), Positives = 87/157 (55%)
Frame = +1
Query: 64 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 243
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 244 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 423
+++T ++K++ I +E+ + V L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 424 MESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDP 534
+++GA+G + +SGK+ G+RA+ KF+ G + +SG+P
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEP 156
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 81.4 bits (192), Expect = 1e-14
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 459
V++ +++ T L + + G A RRA ++ IME A G ++ +
Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133
Query: 460 SGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHV 570
SGKLRG R+ K G++ +G + V HV
Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHV 170
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 80.2 bits (189), Expect = 3e-14
Identities = 47/170 (27%), Positives = 86/170 (50%)
Frame = -2
Query: 573 KHMXGSSVDVIITRVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIAST 394
+H+ +V+ ++ ++RVDHE+ L G+ ++Q +N T T H ++++T+ +
Sbjct: 95 QHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGKSQHTVGGS 154
Query: 393 TYSETSDKLVS*RFGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 214
++ +T +L FGL S +T+ + +ESL G QL DS S S++T
Sbjct: 155 SHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGGQLVDSTSLFSQNT 214
Query: 213 LCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKFSLL 64
L G +N+L+ + GV + Q EE ++ +E+ IS + S L
Sbjct: 215 LGVGSLDNNLQLGWGLSDLNTGVTLFSQFSGEEFVQLGVEDTISYQLSFL 264
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 77.8 bits (183), Expect = 2e-13
Identities = 46/161 (28%), Positives = 81/161 (50%)
Frame = +1
Query: 70 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 249
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 250 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 429
L ++ F + +E+ ++ L A A L L G RRA + + IM+
Sbjct: 69 LQYRLKSDFKLENPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMD 126
Query: 430 SGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVN 552
+GARGC +++SGK+ G R + KF G + G+ +++
Sbjct: 127 AGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMD 167
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 77.8 bits (183), Expect = 2e-13
Identities = 42/169 (24%), Positives = 86/169 (50%)
Frame = +1
Query: 70 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 249
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 250 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 429
L +++ +FN+ +++ E +A + + G+ RRA LR + E
Sbjct: 63 LADILKSKFNLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQE 120
Query: 430 SGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
+ +G EV++SGKL +R++ K+ G++I +G + V A VLL
Sbjct: 121 ANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLL 169
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 6e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 261
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 4e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 264
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 6e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 261
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.006
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 222
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 1e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +1
Query: 55 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 192
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 60.9 bits (141), Expect = 2e-08
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Frame = +1
Query: 70 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 249
RKF+ + EF+ L S V +R TPI + +II + R + + E R
Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAH 63
Query: 250 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIM 426
L +++ +F + + +E+ + L A AE L + + A RR L IM
Sbjct: 64 LAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121
Query: 427 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSG 528
+GA G E+V++G+L GQR K+ +F G + +G
Sbjct: 122 NAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTG 155
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 56.4 bits (130), Expect = 5e-07
Identities = 35/137 (25%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ + + ++LA G + +E+ + +II A + V+G+ G I+EL +++ +
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--V 95
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+V + ++ + A A + ++ A RRA + +MESGARG +V++S
Sbjct: 96 SAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155
Query: 463 GKLRG-QRAKSMKFVXG 510
G+L G ++A++ K + G
Sbjct: 156 GRLGGAEQARTEKVLEG 172
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 4e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 267
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 52.8 bits (121), Expect = 6e-06
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Frame = +1
Query: 256 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 432
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 433 GARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHV 570
G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYL 217
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 51.6 bits (118), Expect = 1e-05
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 187 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 366
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 367 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVXGLM 516
KL R A +R M+SGA+G + VSG+L G A+S + G M
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEM 177
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 50.0 bits (114), Expect = 4e-05
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Frame = +1
Query: 31 PIAI-MAVNNISKKRKFVGDGVFKAELNEFLT--------RELAEDGYSGVEVRVTPIRS 183
PI + + +N + R + G + A L+E L E + VE+ P R
Sbjct: 7 PIGLRLGINKVWSSRWYAGPREYAALLHEDLRIRSMIRSFPECKNADIAEVEIVRHPQRV 66
Query: 184 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 363
+++ R V+G KG I ++ + VQKR N + V++ +++ L A A+++
Sbjct: 67 TVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMELNAYLVAQNVA 123
Query: 364 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 477
+L ++ R+ M+SGA+G ++ VSG+L G
Sbjct: 124 RQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGG 161
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 49.2 bits (112), Expect = 7e-05
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
+ + ++L LA+ S + + I I R ++G+ G+ + +L +++
Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR--- 92
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
I ++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ V
Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152
Query: 460 SGKLRG-QRAKSMKFVXG 510
SG+L G + A+S F G
Sbjct: 153 SGRLNGAEMARSEMFKEG 170
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 48.8 bits (111), Expect = 9e-05
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Frame = +1
Query: 61 SKKRKFVGDGVFKAELNEFLTRELAEDGY--SGVE-VRVTPIRSEIIIM--ATRTQSVLG 225
+ K+ F V ++ EF+T+ + Y +G++ + + R E+ +M R ++G
Sbjct: 24 ASKQDFADLLVEDRKIREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIG 83
Query: 226 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 405
+KG+ I L + +Q N+ + + L E+V L A AE + +L + RR
Sbjct: 84 KKGQEIEILQAELQ---NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMK 140
Query: 406 GVLRFIMESGARGCEVVVSGKLRG 477
+L M++GA+G ++ ++G+L G
Sbjct: 141 RMLEQTMDAGAKGIKIQMAGRLGG 164
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 48.0 bits (109), Expect = 2e-04
Identities = 34/150 (22%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ ++L+ +A+ G + V + T R + I R V+G+ G+ + ++ ++K +
Sbjct: 37 KIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---L 93
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
++ +++ ++ L A AE + +L ++ RRA + M GA G +++ S
Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153
Query: 463 GKLRG-QRAKSMKFVXG-LMIHSGDPCNDY 546
G+L G + A+S ++ G + +H+ DY
Sbjct: 154 GRLGGAEMARSEQYKEGRIPLHTFRADIDY 183
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 48.0 bits (109), Expect = 2e-04
Identities = 36/139 (25%), Positives = 63/139 (45%)
Frame = +1
Query: 61 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 240
+ R F G ++ E+L +L S V + + I I + R V+G+KG
Sbjct: 24 ASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGED 83
Query: 241 IRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRF 420
I L + ++ +P V + E+V + A A+S+ +L + RRA ++
Sbjct: 84 IENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQN 140
Query: 421 IMESGARGCEVVVSGKLRG 477
M GA G +++ SG+L G
Sbjct: 141 AMRLGALGIKIMSSGRLNG 159
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 46.8 bits (106), Expect = 4e-04
Identities = 32/125 (25%), Positives = 60/125 (48%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ ++L + LA V + + + + + R V+G+KG I L +QK +
Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S
Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154
Query: 463 GKLRG 477
G+L G
Sbjct: 155 GRLNG 159
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 44.8 bits (101), Expect = 0.001
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 478 QRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
QRAKSMKF G M+ SG P +Y+++A HVLL
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLL 34
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 44.8 bits (101), Expect = 0.001
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
E+ + + + G S + V R R I + R ++G KG I L ++++FN
Sbjct: 37 EIRKIIKNKYYHAGISEIYVERPDAERINITVKTARPGIIIGRKGSEITSLREELERKFN 96
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
+ V + E++ T L A AES+ ++ + + A + M GA+G +V+V
Sbjct: 97 ---RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMV 153
Query: 460 SGKLRG 477
+G+L G
Sbjct: 154 AGRLGG 159
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 44.4 bits (100), Expect = 0.002
Identities = 34/144 (23%), Positives = 67/144 (46%)
Frame = +1
Query: 70 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 249
+ +VG+ V ++ + ++R + G S V++ T R + I R V+G +G
Sbjct: 29 KAYVGEDV---KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADR 85
Query: 250 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 429
+ ++K + + V+L +V + A A+ + +L ++ RRA ++ M+
Sbjct: 86 IRGDLEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMK 142
Query: 430 SGARGCEVVVSGKLRGQRAKSMKF 501
GA+G V SG+L G +F
Sbjct: 143 GGAKGIRVQCSGRLGGAEMSRSEF 166
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 43.6 bits (98), Expect = 0.003
Identities = 34/135 (25%), Positives = 61/135 (45%)
Frame = +1
Query: 73 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 252
+ VG+ V ++ E+L + L G S +E+ R I + A R V+G G +
Sbjct: 30 ELVGEDV---KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERV 86
Query: 253 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 432
++K + + ++L +V + A A+ + +L +A RRA + M +
Sbjct: 87 RGELEK---LTGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNA 143
Query: 433 GARGCEVVVSGKLRG 477
GA G + SG+L G
Sbjct: 144 GALGIRIKCSGRLGG 158
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 43.6 bits (98), Expect = 0.003
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Frame = +1
Query: 73 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 252
K D V + ++ L +E A G + + + T +I I A R +++G KG I L
Sbjct: 32 KIKQDQVIRNYVHARLKKEKA--GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNL 89
Query: 253 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 432
+ Q+ I + V++ +V + A E++ Y+L ++ RRA ++ M +
Sbjct: 90 S---QELTRITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRA 146
Query: 433 GARGCEVVVSGKLRG-QRAKSMKFVXG-LMIHSGDPCNDYVNTATXHVL 573
GA G + +G+L G + A++ ++ G + +H+ DY + T H +
Sbjct: 147 GAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYA-SVTAHTI 194
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 41.9 bits (94), Expect = 0.010
Identities = 29/138 (21%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ +++ G S V + + + + I++++ ++G KG + +L + +++ +
Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+ + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G
Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156
Query: 466 KLRG-QRAKSMKFVXGLM 516
++ G A++ F+ G M
Sbjct: 157 RIGGADLARAEWFLVGRM 174
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 41.9 bits (94), Expect = 0.010
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Frame = +1
Query: 79 VGDGVFK-AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 255
VGD + + ++ +FL + G +E+ + I + R V+G+ G I L
Sbjct: 29 VGDLLVEDKKIRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALR 88
Query: 256 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 435
++K +SV L +V + A AE++ +L + RRA + M G
Sbjct: 89 LQLEKMLG---KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMG 145
Query: 436 ARGCEVVVSGKLRG 477
ARG + VSG+L G
Sbjct: 146 ARGIKTQVSGRLGG 159
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 41.9 bits (94), Expect = 0.010
Identities = 29/124 (23%), Positives = 59/124 (47%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ +F+ +ELA+ S +E+ + + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 466 KLRG 477
+L G
Sbjct: 155 RLNG 158
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 41.9 bits (94), Expect = 0.010
Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ E + + L + S +++ T +II R VLG++G+ + + + VQK
Sbjct: 38 KIREGVLKLLKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKD 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
VE+ +V A A + ++ + R +R +++G +G + VS
Sbjct: 98 RNLKVEVKVIEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVS 157
Query: 463 GKLRG-QRAKSMKFVXG 510
G+L G + A++ ++ G
Sbjct: 158 GRLGGVEMARTEGYIEG 174
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 41.1 bits (92), Expect = 0.018
Identities = 27/125 (21%), Positives = 63/125 (50%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
+L + ++++ + S V++ + + + R V+G G+R+ E+ ++ ++
Sbjct: 38 KLRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DL 94
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+ V+L +++ L A A S+ ++ +A RRA + M++GA+G ++ S
Sbjct: 95 IGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICAS 154
Query: 463 GKLRG 477
G+L G
Sbjct: 155 GRLGG 159
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 39.9 bits (89), Expect = 0.042
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---R 273
+ ++L L + + + R P R + I + V+G G + L S + K
Sbjct: 39 IRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDT 98
Query: 274 FNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 453
+ + V + ++ L A + + L +A RRA G ++ + +GA+G
Sbjct: 99 YKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRT 158
Query: 454 VVSGKLRG 477
+VSG+L G
Sbjct: 159 MVSGRLNG 166
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 38.7 bits (86), Expect = 0.097
Identities = 27/125 (21%), Positives = 53/125 (42%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ +F+ G V + P + + + + V+G+KG I + +++ +
Sbjct: 37 KIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDK 96
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
P + +K T C AES+ ++ RR LR M G G ++++S
Sbjct: 97 PVNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILIS 153
Query: 463 GKLRG 477
G+L G
Sbjct: 154 GRLNG 158
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 37.9 bits (84), Expect = 0.17
Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ ++L+ + G VE+ R + + A ++ ++G + + + + K
Sbjct: 39 KIRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG- 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+Q V L +V L A A + + ++ R A V++ ++++GARG + VS
Sbjct: 98 RKQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVS 157
Query: 463 GKLRG-QRAKSMKFVXGLM 516
G+L G + A+ + G+M
Sbjct: 158 GRLGGVEMAREEGYTQGVM 176
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 37.9 bits (84), Expect = 0.17
Identities = 23/122 (18%), Positives = 59/122 (48%)
Frame = +1
Query: 139 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 318
+G + +E++ +III + ++ +K RR+ EL VQK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 319 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 498
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 499 FV 504
++
Sbjct: 178 WI 179
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 37.5 bits (83), Expect = 0.22
Identities = 24/83 (28%), Positives = 43/83 (51%)
Frame = +1
Query: 79 VGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTS 258
+ + +FK+E FL+R L+E Y+ ++ RS I R L +K + E+
Sbjct: 224 ISERIFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQLNRVNESL-QKAQSPEEVAR 281
Query: 259 VVQKRFNIPEQSVELYAEKVATR 327
+ ++RFN + +LYAE++ R
Sbjct: 282 LQEERFNYLKSLTQLYAEELKIR 304
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 36.3 bits (80), Expect = 0.52
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 190 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 366
+I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 367 KLIGGLAVRRACYGVLRFIMESGARG 444
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 36.3 bits (80), Expect = 0.52
Identities = 29/125 (23%), Positives = 55/125 (44%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ ++ EL + S V + + + I + R ++G+KG I +L + + N
Sbjct: 38 KIRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
L +V + A A+S+ +L +A RRA ++ M GA G + +
Sbjct: 98 ---ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCT 154
Query: 463 GKLRG 477
G+L G
Sbjct: 155 GRLGG 159
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 36.3 bits (80), Expect = 0.52
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Frame = +1
Query: 154 VEVRVTPIRSEIIIMATRTQSVLGEKGR---RIRELTSVVQKRFN--------IPEQSVE 300
++ +V + E+ I TR ++G K + ++++L +Q N P V
Sbjct: 57 IQRKVDRTQVEVEIRTTRPGLLVGRKRQNCDKLKQLRDELQVELNKFRAKNGVSPTAKVA 116
Query: 301 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 477
L V + AI AE L +L +A RRA VL I +G ++ VSG+L G
Sbjct: 117 LQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNG 175
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 0.90
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 76 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 195
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S3 - Neorickettsia sennetsu (strain Miyayama)
Length = 211
Score = 35.1 bits (77), Expect = 1.2
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN-I 282
+ +++ A G S V ++ +I + + ++G+KG + + K+F +
Sbjct: 39 VTKYVESSFAHIGISKVIIKRKGASCDITLHCMKPGLIIGKKGADLESFRLKLNKKFGFV 98
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM-ESGARGCEVVV 459
P +V +V A+ A+S+ ++L + RR + +M ES +G +V
Sbjct: 99 PSLNV----VEVKKPNSSAVLVAKSIAFQLEKRSSFRRVIKKAIATVMRESDVKGVKVAC 154
Query: 460 SGKLRG-QRAKSMKFVXG-LMIHSGDPCNDY 546
SG+L G + A++ F G + +H+ DY
Sbjct: 155 SGRLSGAEIARTEVFKEGSIPLHTMRADIDY 185
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.7 bits (76), Expect = 1.6
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 169 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 345
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 346 QAE 354
QAE
Sbjct: 225 QAE 227
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 2.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 345 PGRISKIQAYRRSRCTSCLLWCSPFHH 425
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 32.7 bits (71), Expect = 6.4
Identities = 21/107 (19%), Positives = 50/107 (46%)
Frame = +1
Query: 184 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 363
++II + ++ K RRI EL VQK N + + + ++ AE +
Sbjct: 62 QVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIA 121
Query: 364 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 504
+L ++ R+A + ++ +G +V ++G++ G+ ++++
Sbjct: 122 GQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWI 168
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 6.4
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 400 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 498
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_Q2RZ88 Cluster: Putative uncharacterized protein; n=1;
Salinibacter ruber DSM 13855|Rep: Putative
uncharacterized protein - Salinibacter ruber (strain DSM
13855)
Length = 363
Score = 32.3 bits (70), Expect = 8.4
Identities = 28/109 (25%), Positives = 43/109 (39%)
Frame = +1
Query: 217 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 396
+L RR + R++ S + R + +A E Y L RR
Sbjct: 245 LLANPSRRTITSVDLGLVRYDRGPDSTAQNVRRRTVRVVGPLAPRELAAYDLRLPNEARR 304
Query: 397 ACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCND 543
C GV R +E G VV + + G+R K + G + ++GD C D
Sbjct: 305 PCVGVRRVRVER-LDGTTVVSAPRRPGRRPKRGRLARGALPYAGDDCLD 352
>UniRef50_Q225J0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 281
Score = 32.3 bits (70), Expect = 8.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 326 RVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPSTLCVL 204
R AT Y ++DC + +FC +++S I+ S +C+L
Sbjct: 58 REATTYCYTTSDCIRSIYQFCRSQISRHIINERENSQICLL 98
>UniRef50_Q6FX91 Cluster: Candida glabrata strain CBS138 chromosome
B complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome B complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 445
Score = 32.3 bits (70), Expect = 8.4
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 10 DAFFSRLPIAIMAVNNISKKRK--FVGDGVFKAELNEFLTRELAEDGYSGVEV 162
D F L A+MA+NN++++ + F D + K +EFL +L++DGY+ +E+
Sbjct: 252 DQSFYPLQPAMMAINNVARQIEYYFSADNMNK---DEFLKTKLSKDGYAPLEL 301
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,899,932
Number of Sequences: 1657284
Number of extensions: 11563817
Number of successful extensions: 32122
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 31104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32079
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -