Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M04
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 292 1e-79
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 2.0
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 29 2.7
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 2.7
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 3.5
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 6.1
08_01_0346 - 3063440-3064189 28 6.1
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049... 28 6.1
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 27 8.1
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 292 bits (717), Expect = 1e-79
Identities = 144/173 (83%), Positives = 154/173 (89%)
Frame = +1
Query: 58 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 237
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 238 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 417
RIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 418 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 576
F+MESGA+GCEV+VSGKLR QRAKSMKF G MI SG P N Y+++A HVLL
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLL 179
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 315 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 410
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = -1
Query: 541 HYKGLQSGS*VHX-QTSLIWHVDHA-----ACQIQQLHNH 440
HY GS + +TSL+WH + A +CQ ++L +H
Sbjct: 657 HYSDATDGSYIEVKETSLVWHYEEADPDFGSCQAKELQDH 696
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 499 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 395
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = -2
Query: 561 GSSVDVIITRVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSE 382
GS +++ T V R D ++ Y+ G ++ +NN +++G HD N I
Sbjct: 748 GSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGNVIGQGDQDS 807
Query: 381 TSDKLVS 361
++ +S
Sbjct: 808 EKNRYLS 814
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 529 LQSGS*VHXQTSLIWHVDHAACQIQQLHNHGH 434
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 349 AESLRYKLIGGLAVRRACYGVLR 417
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_05_0311 -
24004380-24004440,24004685-24004756,24004875-24004946,
24005155-24005298,24005535-24005606,24006057-24006286
Length = 216
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 189 DLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKFSLL*NIVHGHDCN 34
DL H A +A L QL E+ +E PI +F L N++ CN
Sbjct: 78 DLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCN 129
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 385 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATX 564
A R A G++ + + G G SG+ RGQ +++ + G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 565 HVL 573
+L
Sbjct: 532 EIL 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,834
Number of Sequences: 37544
Number of extensions: 335033
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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