Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M03
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    27   2.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.8  

>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 185 VVLTEQAAALLVHAR-SREHPATAISVASSPXRRWSARQTLHRHNDAFISVPVRL 346
           V+  ++ A+LL     + E  A +I+V      RW     L RHN  F+ + V L
Sbjct: 217 VICKDKKASLLTREDLTDEEKAASIAVEDEKRLRWKRENQLRRHN--FVGLFVEL 269


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 247 RGMFPTPSMDQKSCSLFCKYDAATVSTGI 161
           R +FPT +   +S S F +Y+  TVS  +
Sbjct: 512 RNLFPTSNSGNQSTSSFSRYNQPTVSVDL 540


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 367 SMNNHYL*SNRNRNKRVIMSVQRLPRTPPPLWAARYG 257
           S+   YL S +N N    + + RL      +W+ R+G
Sbjct: 533 SIVERYLISKKNDNNNESIHISRLLDIEESIWSPRFG 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,220,717
Number of Sequences: 5004
Number of extensions: 17930
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)