Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M03
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    28   3.8  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    28   5.1  
06_01_0904 - 6964715-6965245,6965432-6965488,6965680-6965721,696...    27   6.7  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     27   8.8  

>11_06_0767 +
           27121761-27123335,27123701-27123910,27124843-27124911,
           27125387-27125656,27126027-27126377,27126480-27126757,
           27126887-27128330
          Length = 1398

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 343 SNRNRNKRVIMSVQRLPRTPPPLWAARYGNCGRGMFPTPSM 221
           +N  + +R + +V  LP  PPP+          G F  PSM
Sbjct: 42  TNETQYERPVAAVPPLPTGPPPVTTTPMPTSASGAFSQPSM 82


>05_01_0384 +
           2997465-2999777,2999960-3000035,3003027-3003102,
           3003571-3004442,3004592-3004773,3005206-3005295,
           3005388-3005675,3005776-3005997,3006053-3006133,
           3006634-3006861
          Length = 1475

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 179 GCVVLTEQAAALLVHARSREHPATAISVASSP 274
           G VV    AAAL+V  RS  HP   ++ AS P
Sbjct: 53  GAVVDKTDAAALVVVDRSSLHPGMEVTSASDP 84


>06_01_0904 -
           6964715-6965245,6965432-6965488,6965680-6965721,
           6965839-6965944,6966019-6966204,6966479-6966618
          Length = 353

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 295 PRTPPPLWAARYGNCGRGMFPTPSM 221
           P  PP L+   YG    G  P PSM
Sbjct: 231 PPVPPELYVDPYGGAAAGAVPPPSM 255


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
 Frame = +2

Query: 170 GDGG------CVVLTEQAAALLVHARSREHPATAISVASSPXRRWSARQTLHR 310
           GDGG      C +  E +A L V  RS  HP  A   A++     S+ + L R
Sbjct: 27  GDGGDAAGLACAISAEASAVLAVMRRSLRHPRAAADDAAADHPLVSSLKALRR 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,713,765
Number of Sequences: 37544
Number of extensions: 148092
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)