Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M02
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 29 0.91
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 28 1.6
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 3.7
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 6.4
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 26 6.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 6.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.5
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 8.5
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 8.5
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 25 8.5
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 28.7 bits (61), Expect = 0.91
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 233 NNIVITKIGILRSENVLFYSFEPRIEDLEYYKIGFVNLDAPEKTGVINSPNYVMNFGSFD 412
+N+++ + I S NV Y E + +E Y+I + +DA ++ PNY G F
Sbjct: 192 DNVILADLDI-ESTNVADYLHEHIHDMVERYQIDGIRIDAVKQMNPEFFPNYTSAAGVFA 250
Query: 413 IDQ 421
I +
Sbjct: 251 IGE 253
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 419 QDRSLVYLGGNDGIFVLDTGSSQLLPYSSRGDPIESIF 532
QD +L+ + G++ G+S L + G P E ++
Sbjct: 884 QDSNLIEKSSSGGVYASQPGASGYLSHDQSGSPFEDVY 921
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 116 SVRSLLISCCSNFFLM 69
SVRS+ +SCC NF L+
Sbjct: 446 SVRSVCVSCCGNFGLI 461
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 119 KSVRSLLISCCSNFFLMFFFPRSQRVCPPDVCLDVSSAG 3
+ V +L++C FF+ F S + PP + L ++ G
Sbjct: 510 RCVPYILLACLILFFMTLFSRSSSTILPPSILLILTFLG 548
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 179 NKTCYNATYLLDLDA 223
+KTCYNAT + +LD+
Sbjct: 893 SKTCYNATVVAELDS 907
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 658 YVSFVDNKFVYRHIF*NGLKIIAFL 584
++ F+ NK+ YR+ F +K ++FL
Sbjct: 265 FIEFIRNKYQYRNFFMAQVKTLSFL 289
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 263 LRSENVLFYSFEPRIEDLEYYKIGFVNLDAPEKTGVINSPNYVMN 397
+ E Y +PRI+ + + V L++ K +++SP ++N
Sbjct: 1824 VHQEGSFLYELKPRIDQRTFLLVTVVLLESNIKQIILSSPYSIVN 1868
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +2
Query: 425 RSLVYLGGNDGIFVLDTGSSQLLPYSSRGDPIESIFYKNNVYF 553
+ ++ GG D + + G + + ++ DP S NVYF
Sbjct: 59 KKVIKRGGYDAVSATEDGWTNIAEEFNQSDPARSAGILQNVYF 101
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 404 SFDIDQDRSLVYLGGNDG-IFVLDTGSSQLLPYSSRGDPIESI-FYKNNVYF 553
SFD +D ++ LGG G I D + +LL + + + ++ N+ YF
Sbjct: 106 SFDYTRDGRMILLGGRKGHISAFDWRTGKLLTELHLRETVRDVKWFHNHQYF 157
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +2
Query: 404 SFDIDQDRSLVYLGGNDG-IFVLDTGSSQLL-PYSSRGDPIESI 529
SFD + + ++++LGG+ G + V++ SS +L ++ + +E+I
Sbjct: 248 SFDCNAEGNVLFLGGSSGKVKVVNINSSHILASLEAQTESVEAI 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,430
Number of Sequences: 5004
Number of extensions: 62979
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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