Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M02
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9833| Best HMM Match : Chordopox_G2 (HMM E-Value=6.2)               32   0.42 
SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_24680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_9833| Best HMM Match : Chordopox_G2 (HMM E-Value=6.2)
          Length = 367

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
 Frame = +2

Query: 383 NYVMN-FGSFDIDQDRSLVYLGGNDGIFVLDTGSSQLLPYSSRGDPIESIFYKNNVYFVR 559
           N+V+N    F +++    V   GND  FVL+ G+  +L   ++G+  + +  K N YFV 
Sbjct: 112 NFVLNKCHDFVLNKCHDFVLNKGND--FVLNKGNDFVL---NKGN--DFVLNKGN-YFVL 163

Query: 560 YNDRGIVVKKGDYFKTILEYVPVNKFVIHKTDIIVFM--NNFGLFVGRD 700
                 V+ KG+YF  +      N FV++K +  V    N+F L  G D
Sbjct: 164 NKGNDFVLNKGNYF-VLKRQRLCNDFVLNKGNDFVLNKGNDFVLNKGND 211


>SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +2

Query: 368 VINSPN-YVMNFGSFDIDQ---DRSLVYLGGNDGIFVLDTGSSQLLPYSSRGDPIESIFY 535
           V NS   +   FGS   DQ    R  +Y    +  FV DTG + L  Y  +G  + +I  
Sbjct: 596 VFNSEGRFQFAFGSSPQDQLKHPRDAIYHEPAEKFFVSDTGHNVLKVYDKKGKFLRTIGK 655

Query: 536 KNNVYFVRYNDRGIVV-KKG 592
             N     ++ RG+ + KKG
Sbjct: 656 PGNKKGELFSPRGLAIDKKG 675


>SB_24680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -1

Query: 536 CRICSRSDPRDCYKGGVDWSPCPIQIFRHFRPSKPRICLD 417
           C  C    P+ C      +  C  ++   F P + RIC+D
Sbjct: 203 CADCIYDRPQTCVSCSSKFPLCMFKVLEWFNPVESRICID 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,238,724
Number of Sequences: 59808
Number of extensions: 471040
Number of successful extensions: 971
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)