Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M01
         (491 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    24   0.65 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.0  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 318 YTNTLECSYKQSQGNRYPQRNTRSAPGTRVPTSS 217
           YT+     ++ S+ +  P+ + +SAPG R P  S
Sbjct: 223 YTSICIEIWQSSESSLRPRSSQKSAPGKRTPLIS 256



 Score = 20.6 bits (41), Expect = 8.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 226 WNARTGRTTCIALWITIPLRLFI*TFQSICI 318
           W  R   T        +PL + I T+ SICI
Sbjct: 198 WGKRAYVTWYSISVFMVPLVVLIFTYTSICI 228


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 109 AQFYFRPAVPH-VWEFN*LT 165
           A+FY  P VPH  +  N LT
Sbjct: 88  ARFYSTPIVPHFAYNHNPLT 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,429
Number of Sequences: 336
Number of extensions: 1826
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)