Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M01
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    28   0.66 
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   1.2  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    27   1.5  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    23   3.7  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    25   4.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   6.2  

>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
 Frame = +3

Query: 111 TVLFSTCRTSCVGI*LIDVCNVQ*PLLP-TSDKLTHRCWLERAYRAHYVYCAV-----DN 272
           TV + +  T C+ I L+D C    P +P TS K+     L  A++    Y        +N
Sbjct: 98  TVGYVSMDTLCIAISLLDRCFTVKPTIPTTSFKIYAIGCLFIAFKLTSDYSVAKKSFCEN 157

Query: 273 DSPEIVYMNIPKYLYITYNANNFEVSVKTL 362
            +P +   N+ KY  I     NF++ V +L
Sbjct: 158 LAPSLSTKNLEKYEKIVLALLNFDIYVISL 187


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 335 ISVVGNIQILWNVHINNLRGIVIHSAIHVVRPVRAFQPAAVS*LVRRWQQRLLHITN 165
           I +V NI I  +++      + +H  +   RP   F           WQQ +L ITN
Sbjct: 172 IGLVYNISITLSLYSLTTFWVCLHEELAPFRPFPKFLSVKAIIFASYWQQTVLSITN 228


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 201 DKLTHRCWLERAYRAHYVYCAVDND 275
           DK++  C LER     + YC VDN+
Sbjct: 152 DKISQSCLLERLDDEAHQYCYVDNE 176


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 22.6 bits (46), Expect(2) = 3.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 222 WLERAYRAHYVYCAVDND 275
           W  R +RAH+ Y   D D
Sbjct: 142 WWSRDHRAHHRYTDTDKD 159



 Score = 21.4 bits (43), Expect(2) = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 213 HRCWLERAYRA 245
           HR W  RAY+A
Sbjct: 110 HRLWSHRAYKA 120


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 287 NLRGIVIHSAIHVVRP 240
           N  G VIHSAIH  RP
Sbjct: 154 NRAGYVIHSAIHRARP 169


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 329  VVGNIQILWNVHINNLRGIVIHSAIHVVRPVRAF 228
            V  N+Q+ WN  I N     + S +H V  VR F
Sbjct: 1844 VAHNVQVKWNNFIRN----AVMSYVHEVERVRGF 1873



 Score = 24.6 bits (51), Expect = 8.2
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 231  RAYRAHYVYCAVDNDSP 281
            R +R+HY++C++  +SP
Sbjct: 1459 RDFRSHYIHCSLALESP 1475


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +3

Query: 183 PLLPTSDKLTHRCWLERAYRAHYVYCAVDNDSPEIVYMNIPKYLYITYNANNFEVSVKTL 362
           PL+  + K  HR  L + Y  +  Y    +D   + Y   P  ++    +    V  K +
Sbjct: 300 PLIEQTAKRLHRISLSKVYNHYCPYIDTHDDEKILSYSLKPNQVFAFLRSILVRVFPKLI 359

Query: 363 HC*LYSFLLIIK----FVKRKLYETKSL 434
                 F +I+K    F+K   YE+ SL
Sbjct: 360 WGNQRIFEIILKDLETFLKLSRYESFSL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,706
Number of Sequences: 5004
Number of extensions: 29862
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)