Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M01
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 300 IPKYLYITYNANNFEVSV 353
           IP+ LY+T+ ++N ++ V
Sbjct: 805 IPRILYLTWYSSNGDIKV 822


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 283 RLFI*TFQSICILPTTLII 339
           R+F+  F   C+L T LII
Sbjct: 548 RIFLWIFTVACVLGTVLII 566


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 PEIVYMNIPKYLYITYNANNFE 344
           P+I+      Y Y  YN NN++
Sbjct: 79  PKIISSLSNNYNYSNYNNNNYK 100


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 PEIVYMNIPKYLYITYNANNFE 344
           P+I+      Y Y  YN NN++
Sbjct: 79  PKIISSLSNNYNYSNYNNNNYK 100


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 PEIVYMNIPKYLYITYNANNFE 344
           P+I+      Y Y  YN NN++
Sbjct: 79  PKIISSLSNNYNYSNYNNNNYK 100


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 PEIVYMNIPKYLYITYNANNFE 344
           P+I+      Y Y  YN NN++
Sbjct: 79  PKIISSLSNNYNYSNYNNNNYK 100


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 PEIVYMNIPKYLYITYNANNFE 344
           P+I+      Y Y  YN NN++
Sbjct: 79  PKIISSLSNNYNYSNYNNNNYK 100


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 PEIVYMNIPKYLYITYNANNFE 344
           P+I+      Y Y  YN NN++
Sbjct: 79  PKIISSLSNNYNYSNYNNNNYK 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,659
Number of Sequences: 438
Number of extensions: 2227
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)