Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_L22
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 2.1
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 2.1
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 3.6
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 3.6
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.8
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 4.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 4.8
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 8.3
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 8.3
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 8.3
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 25 8.3
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 505 KDEILVRSTDKDRTKMTALVAMSAAYPPEPVQQ 603
K E LV STD + K T+++ ++ PPE V Q
Sbjct: 61 KREPLVSSTDFSQQKSTSVMRTLSSIPPESVVQ 93
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 604 WDESLGKIWQPVPYYSVPLN---EDYLRYFSNCDRFVELM 714
WDE+L K W + Y +P E +LR F+ E++
Sbjct: 160 WDETLFKAWSAIVYTLIPNTPTLESHLREFAKAAEAAEVI 199
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -2
Query: 370 VLPADQKEKA-PHHRELSRHVCSQNKPSTVPC 278
V P DQ K H L+RH +K +PC
Sbjct: 30 VFPCDQCAKRFTRHENLTRHKACHSKAEPIPC 61
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 274 DDMELLMVYFVNRHGERAPDDVELSLSDQQEELKSLTHV 390
D++ELL+ F+ R+G+R V+ S S E L + +H+
Sbjct: 126 DEIELLLEIFIERYGKRWL-SVDYSASQYMELLYTKSHL 163
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 340 PHHRELSRHVCSQNKPSTVPCHRSPPGW 257
P +S H P+TVP H +PPG+
Sbjct: 315 PFSPNVSSHPHMAFLPATVPTHSAPPGF 342
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 397 PEGLTNVGKRRAYQIGKFIRQRYGSEGSKIL 489
P GL ++G R Y I + + Y +G K++
Sbjct: 69 PSGLLHIGHVRVYTISDILSRYYRMKGYKVI 99
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 340 ELSLSDQQEELKSLTHVEGPEGLTNVGKRR 429
EL ++ EE + + + GP+GL +VG++R
Sbjct: 1290 ELEVNKVIEEFQLVINQPGPDGLNSVGQQR 1319
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 438 NRQVHPSALRIRGFENLIQS 497
N Q PSA R+R F N ++S
Sbjct: 295 NNQRRPSASRVRSFSNYVKS 314
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = -3
Query: 360 LIRKRKLHIIGSSLAMSVHKINHQQFHVIVRLPVGDVAGGCVHLHQQIDEY*IFQHFIRA 181
LI ++ H+I ++ + Q H+ RL +GD+ ++ + +++ FQ +
Sbjct: 300 LIYQKDFHLISPLHLTTLRTVPSFQRHIEQRLEIGDLE-SINYVEKMLNDDTYFQEMVIQ 358
Query: 180 TCERRHCRYGLRR 142
CE R L R
Sbjct: 359 MCENLLYRERLLR 371
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 373 SVLPADQKEKAPHHRELSRHVCSQNKPSTVPCHRSP--PGW 257
S L A +K P+ +L ++ +KP TVP P P W
Sbjct: 128 SWLKAQKKRSVPNGTQLVKNYNKISKPETVPPDDDPEKPDW 168
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 334 DVELSLSDQQEELKSLTHVEGPEGLTNVGKRRAYQ 438
+ L L+ E LTH +G + TN+ +R+A +
Sbjct: 55 ECRLCLTTHANENSYLTHTQGKKHQTNLARRQALE 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,665
Number of Sequences: 5004
Number of extensions: 59422
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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