Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L22
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0933 + 22740123-22740364,22741952-22742390,22743060-227431...    30   2.2  
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983...    29   2.8  
02_05_0704 - 31064996-31065214,31065306-31065466,31065583-310656...    29   5.0  
08_01_0336 - 2993322-2993711                                           28   6.6  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    28   8.7  
01_07_0089 - 40999824-41000111,41000184-41000321,41000359-410008...    28   8.7  

>08_02_0933 +
           22740123-22740364,22741952-22742390,22743060-22743172,
           22743470-22743575
          Length = 299

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -2

Query: 361 ADQKEKAPHHRELSRHVCSQNKPS---TVPCHR 272
           ADQ    PH +EL  H C +  PS   T+P HR
Sbjct: 125 ADQALSGPHCQELPDHTCPRFAPSNQATLPSHR 157


>03_02_0610 +
           9834083-9834368,9834495-9834556,9834695-9834787,
           9835689-9835805,9835972-9836055,9836198-9836293,
           9836368-9836445,9836548-9836637,9836733-9836800,
           9836940-9837021,9838203-9838289
          Length = 380

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 369 FFLLIRKRKLHIIGSSLAMSVHKINHQQFHVIVRLPVGDVAGGCVHLHQQ 220
           F LL+R R LHI+G +LA   H +   +F +  R  V D AG    + +Q
Sbjct: 173 FDLLLRHR-LHIVGEALAQCEHTLT--EFGIEHREAVDDTAGAAKTVAEQ 219


>02_05_0704 -
           31064996-31065214,31065306-31065466,31065583-31065660,
           31066560-31066651,31066775-31066833,31066924-31067010,
           31067118-31067214,31067311-31067495,31067593-31067665,
           31067725-31067805,31067948-31068048,31068133-31068246,
           31068391-31068488,31069789-31069915
          Length = 523

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 343 APHHRELSRHVCSQNKPSTVPCHRSPPGW 257
           AP H EL+ H      P    C  SPP W
Sbjct: 14  APKHDELTPHPVKDQLPGVSYCITSPPPW 42


>08_01_0336 - 2993322-2993711
          Length = 129

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 238 TSPGNVTNREANDDMELLMVYFVNRHGERAPDDVELSLSDQQEE 369
           TS      R A+ + +       +R GER PD + L LS  QEE
Sbjct: 41  TSASKAVRRPASVESDQPEEVTASRRGERLPDWLVLELSSPQEE 84


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 499  YLKDEILVRSTDKDRTKMTALVAMSAA 579
            Y+K+++ +RST +D T  T  + + AA
Sbjct: 1941 YMKEQVALRSTTRDETSCTPSITIMAA 1967


>01_07_0089 -
           40999824-41000111,41000184-41000321,41000359-41000840,
           41001532-41001601
          Length = 325

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 475 GSKILSKVYLKDEILVRSTDKDRTKMTALVAMSAAYPPEPVQQW 606
           G+  +    +KDE L+   +    K   LVAM  A   E +Q+W
Sbjct: 242 GTNYIDDPIMKDETLLTEGNYGSVKRVFLVAMDDASSDEEMQRW 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,298,048
Number of Sequences: 37544
Number of extensions: 445918
Number of successful extensions: 1184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)