Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_L22
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_29790| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_2430| Best HMM Match : 7tm_1 (HMM E-Value=1e-06) 29 2.9
SB_28634| Best HMM Match : IncA (HMM E-Value=7.9) 29 3.8
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08) 29 3.8
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 29 5.1
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_39943| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-07) 28 8.9
>SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 511 EILVRSTDKDRTKMTALVAMSAAYPPEPVQ 600
++ RSTDKDRT M+A ++ YPP+ Q
Sbjct: 126 QVYCRSTDKDRTIMSAQAQLNGLYPPKGPQ 155
>SB_29790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 406 LTNVGKRRAYQIGKFIRQRYGSEGSKILSKVYLKDE 513
LT +G ++ Y +GKF+R RY E + L+ Y++++
Sbjct: 29 LTQLGMQQEYYLGKFLRNRY-MESTNFLNSSYIRNQ 63
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 340 PHHR-ELSRHVCSQNKPSTVPCHRSPP 263
PHH + H S N PS +P HR PP
Sbjct: 467 PHHSSDRPHHATSYNAPSGMPTHREPP 493
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 28 SVTVVASRC-YHTRVASSYVNSVRVNSWLPRVPAMLMSWTXQA 153
S T +A+ C Y T++A++ +N R S L V ML +W QA
Sbjct: 525 SKTRLATMCGYRTKLATTLLNGTRQASSLKSVSNMLFAWMVQA 567
>SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 277 DMELLMVYFVNRHGERAPDDVELS---LSDQQEELKSLTHVEGPEGLTNVGKRRAYQIGK 447
D+ L+ F +R +RA LS+ ++LKSL G + +G+RR YQ G+
Sbjct: 88 DVHKLVEQFESRRVKRAASFSHTDYNRLSEINDKLKSLESKYGNAQVLTIGRRRTYQ-GR 146
Query: 448 FIR 456
++R
Sbjct: 147 YLR 149
>SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +1
Query: 235 NTSPGNVTNREANDDMEL---LMVYFVNRHGERAPDDVELSLSDQQEEL 372
+ PG TN +M + M +HG ++ DD L LS EEL
Sbjct: 163 SVQPGRKTNNNQEHEMSVNAVRMPLLAEQHGSKSDDDENLQLSTFSEEL 211
>SB_2430| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
Length = 439
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = +1
Query: 106 WLP-RVPAMLMSWTX----QAVATMAPFARRTNKMLKYLIFVYLL 225
WL VPA L+S T +A A + PF R ++ Y+I+++LL
Sbjct: 78 WLDVTVPASLLSLTGVALERAYAVLFPFKHRVSRTRTYIIWIFLL 122
>SB_28634| Best HMM Match : IncA (HMM E-Value=7.9)
Length = 446
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 463 YGSEGSKILSKVYLKDEILVRSTDKDRTKMTALVAMSAAYPP 588
YG+E KI+ + ++++ +T TAL A++AA PP
Sbjct: 30 YGNEFDKIVDALEEQNKLKTTTTTSSTKSQTALNALTAADPP 71
>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
Length = 504
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 292 STVPCHRSPPGW*RCRGMCSLASANRRILNISAFYSCDVRTAP 164
+T P SP C SL SA+R + +IS+ Y+CD P
Sbjct: 110 TTAPPLTSPTAAPECYSYRSLNSADRAMSHISSQYTCDNNMRP 152
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -2
Query: 703 QTCRSWRSSEDNPRLVEQSSKGL--AARSFLVIHPIA-ELVPGGR--QRTWLLAPSSSSD 539
+T R WR+ RL++ + +GL A R+ L+ I +VPG R QR L + S
Sbjct: 245 KTWRQWRARNQTVRLLQHNRRGLDEAPRARLLSGSIGMGMVPGARNDQRRGTLCTNGSVG 304
Query: 538 PYLC 527
LC
Sbjct: 305 IELC 308
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 595 VQQWDESLGKIWQPVPYYSVPLNEDY-LRYFSNCDRFVELM 714
VQ WD L I +PVP+ S P + Y CDR ++++
Sbjct: 53 VQLWDGQLSVITRPVPHVSNPSEVIVKVAYSGICDRDLQIL 93
>SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +1
Query: 508 DEILVRSTDKDRTKMTALVAMSAAYPPEPVQQWDESLGKIWQPVPY 645
D + S D D T A+ PP P W E ++ P PY
Sbjct: 330 DHAMAVSNDPDLRDETGDEEEEASIPPSPPVLWSEKYAQVNPPRPY 375
>SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 478 SKILSKVYLKDEILVRSTDKDRTKMTALVAMSAAYPPEPVQQWDESLGKIWQPVPYYSVP 657
S I ++++KDE+L K+T AM A+Y + V++ S G S P
Sbjct: 73 SPITGRLFVKDEVLGEMKKDSSGKITGAGAMKASYGIKAVEEVSSS-GSA-------SFP 124
Query: 658 LNEDYLRYF 684
NED+ + F
Sbjct: 125 KNEDWEKEF 133
>SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/117 (20%), Positives = 54/117 (46%)
Frame = +1
Query: 178 RRTNKMLKYLIFVYLLMQVNTSPGNVTNREANDDMELLMVYFVNRHGERAPDDVELSLSD 357
+ TN+ L+ L+F + + +T E ++ E++ + R D +
Sbjct: 53 KNTNRKLRVLVFANTAKHASKACAFLTGTEIKEEKEVIEAQLPLSYNSRTIKD---GFAS 109
Query: 358 QQEELKSLTHVEGPEGLTNVGKRRAYQIGKFIRQRYGSEGSKILSKVYLKDEILVRS 528
+ ++ ++THV + T+ + +++G+ R GS G K+++ + DE LV +
Sbjct: 110 RGLDIPNVTHVIQLDFATDAA-QMLHRVGR--TARAGSHG-KVVNFITKDDEELVNA 162
>SB_39943| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-07)
Length = 411
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = +1
Query: 97 VNS-WLP-RVPAMLMSWTXQAV----ATMAPFARRTNKMLKYLIFVYLL 225
VNS WL +PA L+S T AV A PF R+++ Y+I++ LL
Sbjct: 74 VNSFWLDVTLPASLLSLTGVAVERAYAVFFPFKHRSSRTRTYVIWIVLL 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,754,378
Number of Sequences: 59808
Number of extensions: 491415
Number of successful extensions: 1179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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