Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L20
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1235 - 27233480-27233986                                         30   2.3  
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493...    29   4.0  

>12_02_1235 - 27233480-27233986
          Length = 168

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = -2

Query: 390 LPSNES*RHKGSRGNDAADELVGKRSNIIGISHEQIVSLLNGWLRKSFTQYTKAQLPAWA 211
           + + ES R   +R     DEL  K S +   S + +  L     R +    T AQL   A
Sbjct: 70  ISNRESARRSRARKQRHLDELRAKASALRATSRDLVARLRGARARAALVALTNAQLRDEA 129

Query: 210 GKCTRKYNTKRNIV 169
           GK   +    R ++
Sbjct: 130 GKLALRLAAARRVI 143


>06_03_0056 -
           16046535-16047309,16047625-16048784,16049233-16049340,
           16049487-16049672,16050342-16050398
          Length = 761

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 453 CCLKVLIFIIKGKV*NDYI*RTLQC 527
           CCLK+L+ + +GK   D I RT QC
Sbjct: 610 CCLKILLNLSEGKQAADLIIRTDQC 634


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,255,356
Number of Sequences: 37544
Number of extensions: 306988
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)