Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L20
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.      28   6.3  
U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein...    28   6.3  
U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein...    28   6.3  
U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -3

Query: 278 RCSTAGYANRSHSTQKHNYQPGQENVQESTILKEILLHTVVSDDSGITSYXPFXNF*VTD 99
           RC   G    S+S  +HN + G EN   S + K ++ H    D    +S+ PF  F ++D
Sbjct: 465 RCKDKGMHIGSYSMDQHNGERGSENFLTS-VFKNLVTHPNYRD----SSFTPFVLF-ISD 518

Query: 98  D 96
           D
Sbjct: 519 D 519


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -3

Query: 278 RCSTAGYANRSHSTQKHNYQPGQENVQESTILKEILLHTVVSDDSGITSYXPFXNF*VTD 99
           RC   G    S+S  +HN + G EN   S + K ++ H    D    +S+ PF  F ++D
Sbjct: 628 RCKDKGMHIGSYSMDQHNGERGSENFLTS-VFKNLVTHPNYRD----SSFTPFVLF-ISD 681

Query: 98  D 96
           D
Sbjct: 682 D 682


>Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical
           protein ZK678.1 protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -3

Query: 290 NRLFRCSTAGYANRSHSTQKHNYQPGQENVQESTILKEILLHTVVSDDSGITS 132
           N+    +   Y + S       Y P Q  +Q +   ++  LH+   DD+G +S
Sbjct: 409 NKFAAAAAKAYRDHSEDAPSEPYIPNQSEMQNTVERRKRKLHSPEQDDAGSSS 461


>Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -3

Query: 290 NRLFRCSTAGYANRSHSTQKHNYQPGQENVQESTILKEILLHTVVSDDSGITS 132
           N+    +   Y + S       Y P Q  +Q +   ++  LH+   DD+G +S
Sbjct: 409 NKFAAAAAKAYRDHSEDAPSEPYIPNQSEMQNTVERRKRKLHSPEQDDAGSSS 461


>U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -3

Query: 290 NRLFRCSTAGYANRSHSTQKHNYQPGQENVQESTILKEILLHTVVSDDSGITS 132
           N+    +   Y + S       Y P Q  +Q +   ++  LH+   DD+G +S
Sbjct: 409 NKFAAAAAKAYRDHSEDAPSEPYIPNQSEMQNTVERRKRKLHSPEQDDAGSSS 461


>U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -3

Query: 290 NRLFRCSTAGYANRSHSTQKHNYQPGQENVQESTILKEILLHTVVSDDSGITS 132
           N+    +   Y + S       Y P Q  +Q +   ++  LH+   DD+G +S
Sbjct: 409 NKFAAAAAKAYRDHSEDAPSEPYIPNQSEMQNTVERRKRKLHSPEQDDAGSSS 461


>U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical
           protein T20F7.7 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 435 LNGYGITSSLFLECDLPSNES*RHKGSRGN 346
           + GYG+T  + L C  P +++  H GS G+
Sbjct: 304 IQGYGMTELVVLSCVTPFDDNFEHLGSCGH 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,029
Number of Sequences: 27780
Number of extensions: 303305
Number of successful extensions: 681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)