Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L19
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.23 
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   2.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   2.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   3.7  
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    25   6.4  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    24   8.5  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    24   8.5  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 292 GHVGRYRAVDHRLGSFNADDAVEVP*RIIEERNGNRCRTGRHP 164
           G V   R + H+  +F   D+VE    ++EE NG R   G  P
Sbjct: 611 GTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGKRIFFGSDP 653


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 133 HVGFASEYRLLTHCFFSCGHLKHKINENILLHISLIFHLRS 11
           H G AS Y   T  F    +L+H +  +   H+S +F L++
Sbjct: 467 HTGMASSYEDYTATFIYGLYLRHGLACSPKTHVSFLFLLKT 507


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 148  GIYVEHVGFASEYRLLTHCFFSCGHL 71
            GI + H G    YR +    F CG L
Sbjct: 1224 GIGIHHSGLNRRYRQIVEVLFRCGQL 1249


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 289 HVGRYRAVDHRLGSFNADDAVEV 221
           ++ RY+ +DH L   N +DA+++
Sbjct: 915 YLSRYKNLDHSLTGSNTEDAMDI 937


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 142 YVEHVGFASEYRLLTHCFFSCGHLKHKINENILLHI 35
           +VE+ G    YR     FF CG ++   NE I+L +
Sbjct: 50  FVEYKGEKIVYRRYASLFFVCG-IEQDDNELIILEV 84


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 215 TNHRRTKRKPLQNWPTSMTVSSWD 144
           + HR+++ K L     SM + SWD
Sbjct: 154 SKHRKSRNKFLDKSSGSMEIESWD 177


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 324 GVTSERTLSTVSASLPKPNSXSLSISFTR 410
           G+T   + S+ + S+P     SLS+SF R
Sbjct: 82  GMTMPASSSSGATSVPPEQDPSLSVSFNR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,921
Number of Sequences: 5004
Number of extensions: 26200
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)