Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L17
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021...   131   5e-31
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700...    83   2e-16
06_01_0671 - 4899611-4899829,4900870-4901448                           70   2e-12
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    66   2e-11
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080     52   5e-07
03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953     29   3.2  
01_06_1219 - 35490475-35491635                                         28   7.4  

>02_04_0116 +
           19901546-19901737,19901825-19901899,19902034-19902115,
           19902219-19902298,19903279-19903482,19903625-19903750,
           19903872-19903985,19904802-19904918
          Length = 329

 Score =  131 bits (317), Expect = 5e-31
 Identities = 58/99 (58%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
 Frame = +3

Query: 498 FTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQ 677
           F+HLAW+ T RK GGLG +  PL+SD+T SI+K +GV + D G  LRGLFIID +G+++ 
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271

Query: 678 ITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPXGWKP 791
            T+N+L +GRSVDET+R +QA QY  DN  EVCP GWKP
Sbjct: 272 STINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKP 310



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +3

Query: 276 MISKPAPEWEATAVVNGEFTQLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEF 452
           ++   AP+++A AV + EF  + LS + GK Y++ FFYPLDFTFVCPTEI AFS+R +EF
Sbjct: 69  LVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEF 128

Query: 453 RKINTEVVACSVDS 494
            K+NTE++  S+DS
Sbjct: 129 EKLNTEILGVSIDS 142


>04_03_0889 +
           20568984-20569037,20569271-20569345,20569981-20570088,
           20572066-20572179,20572393-20572509
          Length = 155

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
 Frame = +3

Query: 603 GVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPX 779
           GV ++ +G  LRGLFIID +G+++  T+N+L +GRSVDETLR +QA QY  +N  EVCP 
Sbjct: 73  GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPA 132

Query: 780 GWKP 791
           GWKP
Sbjct: 133 GWKP 136



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%)
 Frame = +3

Query: 402 FVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEG 539
           FV   EI AFS+R EEF KINTEV+  S+DS    L  +    KEG
Sbjct: 48  FVSSAEITAFSDRYEEFEKINTEVLGVSIDSVGIALRGLFIIDKEG 93


>06_01_0671 - 4899611-4899829,4900870-4901448
          Length = 265

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
 Frame = +3

Query: 339 LSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWI 518
           +SLS FKG+ +V +FYP D T  C  +  AF +  E+F+K   EV+  S D   +H  + 
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195

Query: 519 NTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRG--LFIIDDKGILRQITMND 692
              +K+    K+   LLSD  + + K++GV   DL  TL G   +++D  G+++ I  N 
Sbjct: 196 ---KKK---YKLPFTLLSDEGNKVRKEWGV-PADLFGTLPGRQTYVLDKNGVVQYIYNNQ 248

Query: 693 LPVGRSVDETLRLVQA 740
               + + ETL+++Q+
Sbjct: 249 FQPEKHIGETLKILQS 264


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
 Frame = +3

Query: 336 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLA 512
           ++ +  F G  Y++ F +P DFT VC TE+ A +   +EF K   +++  S D   +H  
Sbjct: 56  KIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKD 115

Query: 513 WINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDL-----GH-TLRGLFIIDDKGILR 674
           WI          ++  P+++D +    K   +   D      GH   R L I+     ++
Sbjct: 116 WIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVK 175

Query: 675 QITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPXGWKP 791
              +    VGR++DE +R V A Q    H    P  WKP
Sbjct: 176 LSFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKP 214


>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
          Length = 220

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 7/159 (4%)
 Frame = +3

Query: 336 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLA 512
           ++ L  F G  Y++ F +P DFT VC TE+   +    EF K   +++  S D   +H  
Sbjct: 21  KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80

Query: 513 WINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTL------RGLFIIDDKGILR 674
           WI          ++  P+++D      +   +   D   T       R L I+     ++
Sbjct: 81  WIKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVK 140

Query: 675 QITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPXGWKP 791
              +     GR++ E LR   A      H    P  WKP
Sbjct: 141 LSFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKP 179


>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
          Length = 473

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 232 PGKTLPLPNE*HESPSKSEDEQVITLKSTV 143
           P K +P PN   E P+K  DE+V+T K TV
Sbjct: 126 PEKVVPDPNG--ELPNKDPDEEVVTPKDTV 153


>01_06_1219 - 35490475-35491635
          Length = 386

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 244 FRAPPGKTLPLPNE*HESPSKSEDEQVITLKSTVMMIN 131
           FR+PP +  P P     +PS S+  + +TL+  +   N
Sbjct: 249 FRSPPAQYAPSPLAGASNPSSSQSRRFVTLRDAMQEEN 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,756,559
Number of Sequences: 37544
Number of extensions: 390558
Number of successful extensions: 908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)