Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_L14
(601 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5; Endoptery... 41 0.026
UniRef50_UPI00005A03C2 Cluster: PREDICTED: hypothetical protein ... 38 0.24
UniRef50_UPI0000E25800 Cluster: PREDICTED: similar to Transcript... 35 1.3
UniRef50_Q4SAD4 Cluster: Chromosome 19 SCAF14691, whole genome s... 35 1.3
UniRef50_A5NMZ6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.2
UniRef50_Q7S888 Cluster: Predicted protein; n=1; Neurospora cras... 34 2.9
UniRef50_UPI000155E4F1 Cluster: PREDICTED: similar to alpha3 typ... 33 3.9
UniRef50_UPI0000F2C16A Cluster: PREDICTED: hypothetical protein;... 33 3.9
UniRef50_A3K146 Cluster: LysM domain protein; n=1; Sagittula ste... 33 3.9
UniRef50_A2E491 Cluster: PIKK family atypical protein kinase; n=... 33 5.1
UniRef50_Q27W72 Cluster: NigAIII; n=1; Streptomyces violaceusnig... 33 6.8
UniRef50_A6G668 Cluster: ABC transporter related protein; n=1; P... 33 6.8
UniRef50_Q5TZA2 Cluster: Rootletin; n=40; Amniota|Rep: Rootletin... 33 6.8
UniRef50_A5NRT3 Cluster: Putative uncharacterized protein; n=1; ... 32 9.0
UniRef50_O97406 Cluster: Collagen pro alpha-chain precursor; n=1... 32 9.0
UniRef50_P18835 Cluster: Cuticle collagen 19 precursor; n=9; Rha... 32 9.0
>UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5;
Endopterygota|Rep: Ornithine decarboxylase - Bombyx mori
(Silk moth)
Length = 444
Score = 40.7 bits (91), Expect = 0.026
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1
Query: 544 MKVVEEQRIXVMEGSWSPV 600
MKVVEEQRI VMEGSWSPV
Sbjct: 1 MKVVEEQRIRVMEGSWSPV 19
>UniRef50_UPI00005A03C2 Cluster: PREDICTED: hypothetical protein
XP_856358; n=1; Canis lupus familiaris|Rep: PREDICTED:
hypothetical protein XP_856358 - Canis familiaris
Length = 315
Score = 37.5 bits (83), Expect = 0.24
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 158 TKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPRCWRR 298
+ +P ++ L WL + GE GA GS G +G P P PR WRR
Sbjct: 103 SSLPARSKGLTGSWLTMRLVGEQGARGSQGTSG--VLP-PGPRVWRR 146
>UniRef50_UPI0000E25800 Cluster: PREDICTED: similar to Transcription
factor COE4 (Early B-cell factor 4) (EBF-4)
(Olf-1/EBF-like 4) (OE-4) (O/E-4), partial; n=1; Pan
troglodytes|Rep: PREDICTED: similar to Transcription
factor COE4 (Early B-cell factor 4) (EBF-4)
(Olf-1/EBF-like 4) (OE-4) (O/E-4), partial - Pan
troglodytes
Length = 355
Score = 35.1 bits (77), Expect = 1.3
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 215 PGESGACGSAGRNGRTARPRPSPRCW-RRALNVDP 316
P G G RNG RPRPS R W A+ VDP
Sbjct: 263 PAREGRSGDGERNGTQPRPRPSQRGWGAGAVRVDP 297
>UniRef50_Q4SAD4 Cluster: Chromosome 19 SCAF14691, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 19 SCAF14691, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1400
Score = 35.1 bits (77), Expect = 1.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 295 TSPQRRPALAAPCQGPLTP 351
TSP RRP+L PC+GPL+P
Sbjct: 886 TSPVRRPSLLMPCEGPLSP 904
>UniRef50_A5NMZ6 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 198
Score = 34.3 bits (75), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 412 GAWSWGPTSASPQVSGECGEVASAGPGTAQPGR 314
G +SWG A+P G V++ GPG A GR
Sbjct: 34 GRFSWGARKATPAAKGPADGVSACGPGNAGAGR 66
>UniRef50_Q7S888 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 1001
Score = 33.9 bits (74), Expect = 2.9
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +3
Query: 234 VAVPGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQAP 413
V P T Q P+T T P A+P PA + + T G++ G +
Sbjct: 186 VRTPSRTRLQTTAAAAASAATTPTTPTAPTAAIPAPASTPALRTASTSGVSSAGKGRKGK 245
Query: 414 TT 419
TT
Sbjct: 246 TT 247
>UniRef50_UPI000155E4F1 Cluster: PREDICTED: similar to alpha3 type
IV collagen; n=1; Equus caballus|Rep: PREDICTED: similar
to alpha3 type IV collagen - Equus caballus
Length = 1658
Score = 33.5 bits (73), Expect = 3.9
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +2
Query: 167 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 277
PP + P LG PGE GA G G G T P P
Sbjct: 856 PPGQKGYPGNPGFLGPPGEKGAVGMMGSPGFTGPPGP 892
>UniRef50_UPI0000F2C16A Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 166
Score = 33.5 bits (73), Expect = 3.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 312 TRPG--CAVPGPADATSPHSPDTCGLALVGPQDQAP 413
+RPG C P PA ++ P +P + G +L GP AP
Sbjct: 23 SRPGLPCLPPDPASSSQPPTPGSSGSSLQGPDSPAP 58
>UniRef50_A3K146 Cluster: LysM domain protein; n=1; Sagittula
stellata E-37|Rep: LysM domain protein - Sagittula
stellata E-37
Length = 598
Score = 33.5 bits (73), Expect = 3.9
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Frame = +3
Query: 222 SPARVAVPGGTDAQXXXXXXXXXXDEPST*TRPGCAVPG----PADATSPHSPDTCGLAL 389
S R A PGG D D+P A PG PADA +P +
Sbjct: 342 SAPRPATPGGLDLASTSGSAPVATDDPEAPPSVATAEPGAPAMPADAAAPAGTPSAQDTD 401
Query: 390 VGPQDQAPTTLDTANPDS 443
+ +D AP +T P +
Sbjct: 402 IASRDPAPQPDETGAPQA 419
>UniRef50_A2E491 Cluster: PIKK family atypical protein kinase; n=1;
Trichomonas vaginalis G3|Rep: PIKK family atypical
protein kinase - Trichomonas vaginalis G3
Length = 2666
Score = 33.1 bits (72), Expect = 5.1
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = -3
Query: 194 HWVGFQLTAESW*FSCTWHKKTDPRLMILFHVFSREKLYRPCPNMIFKEIHTK 36
+W+G Q+ FS K DP L LF FSRE CP+ F EI K
Sbjct: 1613 NWLGCQIEFSK--FSQIALKLGDPYLSFLFAEFSREASDDSCPDSYFMEIFKK 1663
>UniRef50_Q27W72 Cluster: NigAIII; n=1; Streptomyces
violaceusniger|Rep: NigAIII - Streptomyces violaceoniger
Length = 4083
Score = 32.7 bits (71), Expect = 6.8
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 333 PGPADATSPHSPDTCGLALVGPQDQAPTTLD-TANPD 440
P P SP P T AL+GP+DQAP D A+PD
Sbjct: 1277 PYPISVDSP--PRTASWALIGPRDQAPAAPDLPAHPD 1311
>UniRef50_A6G668 Cluster: ABC transporter related protein; n=1;
Plesiocystis pacifica SIR-1|Rep: ABC transporter related
protein - Plesiocystis pacifica SIR-1
Length = 613
Score = 32.7 bits (71), Expect = 6.8
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 237 PHAPDSPGAPKISHPLGRLSVDG 169
P DSPGA +S P GRLS DG
Sbjct: 339 PEIADSPGAQALSQPKGRLSFDG 361
>UniRef50_Q5TZA2 Cluster: Rootletin; n=40; Amniota|Rep: Rootletin -
Homo sapiens (Human)
Length = 2017
Score = 32.7 bits (71), Expect = 6.8
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 222 SPARVAVPGGTDAQXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 371
SPA VPG + PST PG P P ATSP SPD
Sbjct: 1451 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1501
>UniRef50_A5NRT3 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 144
Score = 32.3 bits (70), Expect = 9.0
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2
Query: 227 GACGSAGRNGRTARPRPSPRCWR 295
G C SA R R RPRPSPR R
Sbjct: 104 GKCSSASRGRRCRRPRPSPRTCR 126
>UniRef50_O97406 Cluster: Collagen pro alpha-chain precursor; n=1;
Haliotis discus|Rep: Collagen pro alpha-chain precursor
- Haliotis discus (Abalone)
Length = 1439
Score = 32.3 bits (70), Expect = 9.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 209 GAPGESGACGSAGRNGRTARPRPS 280
G PGE+GA G AG +G++ P PS
Sbjct: 513 GPPGEAGAVGPAGPDGKSGPPGPS 536
>UniRef50_P18835 Cluster: Cuticle collagen 19 precursor; n=9;
Rhabditida|Rep: Cuticle collagen 19 precursor -
Caenorhabditis elegans
Length = 289
Score = 32.3 bits (70), Expect = 9.0
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 206 LGAPGESGACGSAGRNGRTARPRPS-PR 286
+G PGE G G AGR G RP P+ PR
Sbjct: 176 VGGPGEQGPQGDAGRPGAAGRPGPAGPR 203
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,742,410
Number of Sequences: 1657284
Number of extensions: 14178632
Number of successful extensions: 49790
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 43452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49608
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -