Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_L14
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 31 0.93
06_02_0280 - 13708651-13708839,13708895-13709164,13709889-137104... 31 0.93
01_05_0175 - 18936752-18937621,18938855-18941641 31 0.93
09_02_0543 + 10427321-10428315,10428440-10429154 29 2.2
02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608 29 2.2
06_01_0170 - 1352865-1353422,1355049-1355327 29 3.8
07_01_0040 + 325737-328181 28 5.0
04_03_1022 - 21778315-21779007 28 5.0
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584 28 6.6
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754 28 6.6
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 28 6.6
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 27 8.7
06_03_1105 - 27634787-27636025 27 8.7
05_05_0120 + 22520285-22520569 27 8.7
05_05_0004 - 21422483-21422785,21423354-21423938,21424746-214248... 27 8.7
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 161 KIPPSTESLPSGWLILGAPGESGACGSAGRNG-RTARPRPSPR 286
+ P ST L + A SG G +G RTARP P+PR
Sbjct: 14 RCPRSTAVLAASRFAASASSSSGGGGGGSSSGARTARPPPAPR 56
>06_02_0280 -
13708651-13708839,13708895-13709164,13709889-13710476,
13710511-13710686,13710897-13711029,13711193-13711462,
13711521-13711889
Length = 664
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 77 GKVFHGKTRETKSLIVGQFFCAKCN*TTKIPPSTESLPSGWL-ILGAPGESGACGSAGRN 253
G F KTR ++ + AK + K+ + P G + L + CGS G +
Sbjct: 116 GGAFFSKTRGMHTVKETEMLAAKLDLLMKLLDDHDKRPQGTIKALDSDVTCEVCGSTGHS 175
Query: 254 GRTARPRPSPRC 289
G TA+ RC
Sbjct: 176 GMTAQKPVKRRC 187
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 232 VWQCRAERTHSPP-XXXXXXXXTSPQRRPALAAPCQGPLTPPH 357
VW+CR + + +PP T+P A AAP + PPH
Sbjct: 57 VWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPH 99
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 333 PGPADATSPHSPDTCGLALVGPQDQAP 413
PGPA A SPHSP V P P
Sbjct: 70 PGPAAAPSPHSPSPSNAPWVAPAADIP 96
>02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608
Length = 375
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -1
Query: 445 QLSGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPGRVYV 305
+ +G A + AW+WGP G C A P A +Y+
Sbjct: 185 RFAGSAEAFDPAAWAWGPVQERVLDEGTCPRTCCAAPAPAAGATMYM 231
>06_01_0170 - 1352865-1353422,1355049-1355327
Length = 278
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 227 GACGSAGRNGRTARPRPSPR 286
G GSAGR+GR PR +PR
Sbjct: 208 GVDGSAGRSGRRGPPRAAPR 227
>07_01_0040 + 325737-328181
Length = 814
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 149 CTWHKKTDPRLMILFHVFSREK 84
C WHK+ P + +L +VF R K
Sbjct: 504 CCWHKEEKPHVDVLTYVFDRLK 525
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 301 PQRRPALAAPCQGPLTPPHHIH 366
P PA AP GP PPHH H
Sbjct: 71 PPHTPA-PAPAPGPYIPPHHPH 91
>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
Length = 607
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 466 CRFLVTFQLSGLAVSSVVGAWSWGPTSA 383
C LV F++ G ++ + AW WG SA
Sbjct: 494 CHHLVIFRVHGNTLTGNLPAWVWGQQSA 521
>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
Length = 203
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 515 FLSLSRARRGPAPR--STVPFPC--NVSAVRVSGVKCRRSL 405
F+ L RR PAPR +T+P C VS+V S CR L
Sbjct: 42 FIELCIGRRSPAPRLSTTLPLACCHRVSSVYRSRWHCRLGL 82
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 297 EPST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQA 410
E ST T VP P+DAT+P+ + G A P+ A
Sbjct: 307 ERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDA 344
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 566 RCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVP 462
RCSST+ + F W S + A R P P P
Sbjct: 121 RCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPP 155
>06_03_1105 - 27634787-27636025
Length = 412
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 200 LILGAPGESGACGSAGRNGRT-ARPRPSPRCWRRALNVDPP 319
L+ + S + S+ R GR+ AR RPSP R L+VD P
Sbjct: 270 LVRSSHRHSTSSSSSSRAGRSPARRRPSPPPPPRCLSVDSP 310
>05_05_0120 + 22520285-22520569
Length = 94
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 179 ESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPRC-WRRALNV 310
+ +P+G G G GA +A G + RPSP RRA++V
Sbjct: 28 DDVPAGAGGAGEDGRKGAAATADAAGGQQQARPSPAARHRRAMSV 72
>05_05_0004 -
21422483-21422785,21423354-21423938,21424746-21424849,
21425467-21425767
Length = 430
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 246 PALPHAPDSPGAPKISHPLGRLSVDGGIL 160
PALPH P AP+ S + ++ GGI+
Sbjct: 103 PALPHQPPQQPAPRTSVAVVAVAAAGGIV 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,656,469
Number of Sequences: 37544
Number of extensions: 434360
Number of successful extensions: 1617
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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