Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L12
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    75   4e-14
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    71   4e-13
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    31   0.75 
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    31   0.75 
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    31   0.75 
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 40/89 (44%), Positives = 49/89 (55%)
 Frame = +1

Query: 151 TGXQISTILKAAAVXVXPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXX 330
           TG +I+T+LKAA V   PYWPGLFAKALEG++V++LIT++ SG                 
Sbjct: 24  TGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAG 83

Query: 331 XXXXXXXXXXXXXXXXVESDDDMGFGLFD 417
                            ESDDDMGFGLFD
Sbjct: 84  GAAPAAETKKKEEPKE-ESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 39/89 (43%), Positives = 48/89 (53%)
 Frame = +1

Query: 151 TGXQISTILKAAAVXVXPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXX 330
           TG +I+T+LKAA V   P WPGLFAKALEG++V++LIT++ SG                 
Sbjct: 24  TGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAG 83

Query: 331 XXXXXXXXXXXXXXXXVESDDDMGFGLFD 417
                            ESDDDMGFGLFD
Sbjct: 84  GAAPAAETKKKEEPKE-ESDDDMGFGLFD 111


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 382 ESDDDMGFGLFD 417
           ESDDDMGFGLFD
Sbjct: 301 ESDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 382 ESDDDMGFGLFD 417
           ESDDDMGFGLFD
Sbjct: 96  ESDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 382 ESDDDMGFGLFD 417
           ESDDDMGFGLFD
Sbjct: 99  ESDDDMGFGLFD 110


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +3

Query: 15  HSNVACSLLSLRPPATCTFKTQNG-VKSXIXMCFLCSHPGGCCCCR 149
           H     +L  ++     T    NG VK     C  C    GCCCCR
Sbjct: 45  HETTEVALPDVKTTDIDTLGESNGRVKRQGGGCGCCGCGCGCCCCR 90


>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
           protein C44B9.4 protein.
          Length = 1150

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 105 MCFLCSHPGGCCCCRNWXANFH 170
           +C +CS  G   CC    A+FH
Sbjct: 61  ICGICSSGGNILCCEQCPASFH 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,144,353
Number of Sequences: 27780
Number of extensions: 121731
Number of successful extensions: 284
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)