Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_L10
(491 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 85 1e-15
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 71 2e-11
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 70 3e-11
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 64 2e-09
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 59 5e-08
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 59 6e-08
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 54 1e-06
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 52 9e-06
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 48 9e-05
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 48 1e-04
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 47 2e-04
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 46 3e-04
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 46 5e-04
UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 46 6e-04
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 44 0.001
UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 44 0.002
UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|R... 40 0.023
UniRef50_O18118 Cluster: Putative uncharacterized protein pqn-71... 34 2.0
UniRef50_Q9IMU3 Cluster: VP1; n=5; Banna virus|Rep: VP1 - Banna ... 33 2.6
UniRef50_A0DRX9 Cluster: Chromosome undetermined scaffold_61, wh... 33 4.6
UniRef50_A1WE37 Cluster: Putative transcriptional regulator; n=1... 32 8.0
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 84.6 bits (200), Expect = 1e-15
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +3
Query: 87 QPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDILT 239
QP LARV VLGRTGSQGQCTQV+VEF+ + SR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 70.5 bits (165), Expect = 2e-11
Identities = 33/44 (75%), Positives = 37/44 (84%)
Frame = +3
Query: 87 QPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPV 218
QP LARV VLGRTGSQGQCTQV+V+F+ + SR IIRNVKGPV
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 69.7 bits (163), Expect = 3e-11
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = +3
Query: 90 PNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDIL 236
P LA+V+ VLGRTGS+G TQV+VEF+ + SR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 63.7 bits (148), Expect = 2e-09
Identities = 33/53 (62%), Positives = 40/53 (75%)
Frame = +3
Query: 81 MDQPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDILT 239
MD A VV V+GRTGS+GQ TQV+V+F + R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 59.3 bits (137), Expect = 5e-08
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +3
Query: 87 QPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGP 215
QP L +V VLGRTGS+G TQV+VEF+ + SR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 58.8 bits (136), Expect = 6e-08
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +3
Query: 87 QPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGP 215
QP L +V VLGRTGS+G TQV+VEF+ + SR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 54.4 bits (125), Expect = 1e-06
Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Frame = +3
Query: 102 ARVVXVLGRTGSQGQCTQVKVEFI--GEXSRQIIRNVKGPVRDGDIL 236
A VV +LGRTG G+ TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 51.6 bits (118), Expect = 9e-06
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 5/49 (10%)
Frame = +3
Query: 108 VVXVLGRTGSQGQCTQVKVEFIG-----EXSRQIIRNVKGPVRDGDILT 239
++ VLGRTGS+G TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 43 IIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 48.4 bits (110), Expect = 9e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +3
Query: 96 VLARVVXVLGRTGSQGQCTQVKVEFIG--EXSRQIIRNVKGPVRDGDIL 236
V A V+ V+GRTG G QV+ + +G + R ++RNVKGPV+ GDI+
Sbjct: 11 VAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 48.0 bits (109), Expect = 1e-04
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +3
Query: 102 ARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDI 233
ARV+ +L R G++G T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 47.2 bits (107), Expect = 2e-04
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +3
Query: 108 VVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDIL 236
V +L + G +GQ TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 13 VTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 46.4 bits (105), Expect = 3e-04
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +3
Query: 102 ARVVXVLGRTGSQGQCTQVKVEFIG--EXSRQIIRNVKGPVRDGDIL 236
A V+ +L RTG G+ TQV+V + + R + RNVKGPVR GDIL
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = -1
Query: 275 SQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKH 117
+QPP R ++ EDVS+ HV+DD A + +EL HLS L L A+H
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSALPLGAGPAQH 108
>UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28
- Encephalitozoon cuniculi
Length = 65
Score = 45.6 bits (103), Expect = 6e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +3
Query: 84 DQPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDIL 236
+Q V VLGRTG G TQVK+E + R I R VKGPV GDI+
Sbjct: 3 EQQEFFGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPVAVGDII 52
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 44.4 bits (100), Expect = 0.001
Identities = 25/43 (58%), Positives = 27/43 (62%)
Frame = -2
Query: 229 SPSRTGPFTFLMI*RLXSPMNSTFT*VHWP*EPVRPSTXTTRA 101
SP RTGP TF M RL S ++ST T H P EPV PST T A
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126
>UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S28e -
Halobacterium salinarium (Halobacterium halobium)
Length = 74
Score = 43.6 bits (98), Expect = 0.002
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +3
Query: 102 ARVVXVLGRTGSQGQCTQVK--VEFIGEXSRQIIRNVKGPVRDGDIL 236
A V+ V+G+TG G+ QVK ++ G R I RNV GPVR GD++
Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVI 59
>UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|Rep:
OTTHUMP00000028879 - Homo sapiens (Human)
Length = 57
Score = 40.3 bits (90), Expect = 0.023
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 90 PNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIR 200
P L + VLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>UniRef50_O18118 Cluster: Putative uncharacterized protein pqn-71;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein pqn-71 - Caenorhabditis elegans
Length = 330
Score = 33.9 bits (74), Expect = 2.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 20 ETRQLWCTCASCIKLXXTSQNGSTQRSCSCRXS 118
ETRQ C CA ++ + Q S Q SCSC+ S
Sbjct: 22 ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54
>UniRef50_Q9IMU3 Cluster: VP1; n=5; Banna virus|Rep: VP1 - Banna virus
Length = 1219
Score = 33.5 bits (73), Expect = 2.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 248 FKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKHXHDTSKNV 93
FK+ DV+ G H+S+ L +P + HL+ L +T K D + ++
Sbjct: 963 FKRKNDVNPDGGGIHISEGLKRLMPEYCERHLNELVYKTLDDKVIRDYTSDI 1014
>UniRef50_A0DRX9 Cluster: Chromosome undetermined scaffold_61, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_61,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 927
Score = 32.7 bits (71), Expect = 4.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 3 AGRCFSKHASFGARVLLALSSXLQAKMDQPNVLARV 110
A CFS + A ++ LS LQ+K+ PN L +V
Sbjct: 156 AENCFSNNRDISANCIICLSEFLQSKLQNPNNLTQV 191
>UniRef50_A1WE37 Cluster: Putative transcriptional regulator; n=1;
Verminephrobacter eiseniae EF01-2|Rep: Putative
transcriptional regulator - Verminephrobacter eiseniae
(strain EF01-2)
Length = 663
Score = 31.9 bits (69), Expect = 8.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 197 DDLTAGLPNELDLHLSTLALRTSTAKHXHDTSKNVGLIHF 78
+D+ +GL +E D ALR + + HD +NVGL+ F
Sbjct: 192 NDIGSGLVDEADTKTLYRALRIADPVNGHDAPRNVGLLFF 231
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 380,186,973
Number of Sequences: 1657284
Number of extensions: 6274948
Number of successful extensions: 13880
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13870
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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