Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L10
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    77   7e-15
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    34   0.049
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    30   1.0  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 77.0 bits (181), Expect = 7e-15
 Identities = 37/48 (77%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
 Frame = +3

Query: 99  LARVVXVLGRTGSQGQCTQVKVEFIG-EXSRQIIRNVKGPVRDGDILT 239
           LARV  V+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 6   LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 34.3 bits (75), Expect = 0.049
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 20  ETRQLWCTCASCIKLXXTSQNGSTQRSCSCRXS 118
           ETRQ  C CA  ++   + Q  S Q SCSC+ S
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 181 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 306
           P   S E  +DP   E+S +  NLNVK+    + L H  IR+
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 153 QVKVEFIGEXSRQIIRNVKGP-VRD 224
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,871,653
Number of Sequences: 27780
Number of extensions: 152274
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)