Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_L07
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 30 0.25
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 30 0.33
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 29 0.57
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 29 0.57
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 28 1.3
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 27 1.7
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 1.7
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 7.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.0
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 25 7.0
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 9.3
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 9.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 9.3
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.3 bits (65), Expect = 0.25
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = -2
Query: 552 SPLSSITFLGAVTVKIPSVDSSETTLAVSAPSGKEYLRTNCLDTYPCSSCFSSCLASTTT 373
S S+ T + +V P+V SSET +VS S + ++ +D ++ S+ ST+
Sbjct: 193 SSSSTNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSE 252
Query: 372 *PSAVFTDISSGEKCWTSKLIWNLSFSVLIVEPRSRAKDAV 250
+ TDI + +S S S +VE S D+V
Sbjct: 253 ATVSFSTDIPATPSTLSSPA---SSSSSYLVETSSTLTDSV 290
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.9 bits (64), Expect = 0.33
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 272 LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEHGYVSRQFVRKY- 448
+G T + E D+F N V +F P+ + + K +E+ DEH Q V +
Sbjct: 1048 IGETSRKELDQFLRNSKVNNFDPNAEAQRHLSYQARYRLKKQERLDEHKEEQEQLVTELL 1107
Query: 449 -SLPEGADTAN 478
LPE N
Sbjct: 1108 GYLPEPPSKPN 1118
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 29.1 bits (62), Expect = 0.57
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 398 EKQDEHGYVSRQFVRKYSLPEGADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITKT 577
E Q Y+ RQF Y+ ++++++ EL + I T T ++ + +P+T+
Sbjct: 123 EVQSTIEYIMRQF---YAYVSSQESSHIIYELLKNAISTTTLVLSDLNHFRSKKIPLTEF 179
Query: 578 GPVRKESAXSKNAKEA 625
ESA SK +A
Sbjct: 180 ALRYPESAVSKLLDQA 195
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 455 PEGADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITKTGPVRKESAXSKNAKEADQ 631
P G V E+ +G+LTV+A K K E++V G + +E + KEA++
Sbjct: 495 PRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEED-IERMVKEAEE 552
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +2
Query: 461 GADTANVVSELSTDGILTVTAPRKVIDDKGERVVPITK 574
G D + + S+++ D L + RK+ D++ E++ ++K
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSK 489
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 425 SRQFVRKYSLPEGADTANVVSELSTDGILTVTAPRK 532
S + +R Y +P AD N++ E+S G + + K
Sbjct: 113 SAKSIRSYIIPTNADPQNIIYEISQSGYYCIWSHSK 148
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 570 VIGTTLSPLSSITFLGAVTVKIPSVD 493
++GT L PL+ +T L + VK+P D
Sbjct: 561 ILGTILIPLNLVTGLWGMNVKVPGQD 586
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 113 EECPCKKQRDNKLVDQDFGMPLTPDD 190
EE KK +D ++VD FG+ L+ DD
Sbjct: 338 EEEERKKGKDGQIVDAGFGLVLSKDD 363
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.3
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 570 VIGTTLSPLSSITFLGAVTVKIPSVDSSETTLAVSAPS-GKEYLRTNCLDTYPCSSCFSS 394
+I + S SS + G+ + +PS +S TT P+ G L T T P +S S+
Sbjct: 87 IITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSST 146
Query: 393 CLASTTT*PSAVFTD 349
+ T S+ T+
Sbjct: 147 SIPIPPTSTSSTDTN 161
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 272 LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEA 388
L S+I+ EK + LD++ +SP+E+ + Y + EA
Sbjct: 475 LKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWYPIPEA 513
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 387 LSTRKNRTST--DTCLGSLCASTPYQKGLTQLTLSPSYPLTEF 509
L T +NRT+T C S +PY GLT L YP E+
Sbjct: 634 LYTNQNRTTTLDYQCSSSNSVVSPYASGLTLKNL--IYPFEEY 674
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 549 PLSSITFLGAVTVKIPSVDSSETTLAVSAPSGKEYLRTNCLDT--YPCSSCFSSCL 388
P++ + ++ ++ SV +S ++PS EYL CL T CSS ++ L
Sbjct: 203 PIADTSIKDSIKKRVVSVLTSRVIEIDNSPSFPEYLSFRCLRTVALACSSYAANVL 258
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 129 LQGHSSSATTILINSN 82
L+GHSSS T++L ++N
Sbjct: 10 LRGHSSSVTSVLFDAN 25
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 607 RLCRFLANRASFSDRNNSFS 548
R+ RFLAN+ S + R ++FS
Sbjct: 370 RISRFLANKCSIASRIDNFS 389
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 449 SLPEGADTANVVSELSTDGILTVTAPRKVIDDK 547
SLPE T ++ + + + ++TVT ++ + K
Sbjct: 598 SLPEWCGTETIIRQFAMNLVMTVTNDKQAVSSK 630
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,059
Number of Sequences: 5004
Number of extensions: 51701
Number of successful extensions: 180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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