Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L06
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0389 - 8456957-8459917,8461941-8462267                           31   0.78 
11_06_0691 - 26315738-26315848,26315939-26316163,26316249-263166...    28   7.3  
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     28   7.3  
01_04_0054 - 15456668-15459691                                         28   7.3  
07_03_0382 + 17470508-17470807,17471449-17474517                       28   9.6  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   9.6  
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727...    28   9.6  

>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 451 SLKNMYGLRSTQIMWLHRLANSASQVIRIRGLDIKASSPEIIQSIVQLLTWNDVAIGF 624
           SL N+  L      WL  L    S ++ +R LD++ ++P I+ S +  L       GF
Sbjct: 596 SLSNLQFLILRCCYWLETLPEEISNLVSLRSLDLEGTTPHIVLSRLSALEQLTALHGF 653


>11_06_0691 -
           26315738-26315848,26315939-26316163,26316249-26316602,
           26316681-26316795,26316882-26316925,26317026-26317122,
           26317243-26317406,26317499-26317726,26317903-26318222,
           26320028-26320136
          Length = 588

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 343 FLLHHILF*KIQVHSHPS-TAALDLMPAHCYRLFSKVDLPNLL 218
           F++H+ +   I+ +   S  A  D +PAHC  L+ K DL  ++
Sbjct: 479 FVIHNTMSKSIESYYQESGRAGRDNLPAHCIVLYQKKDLGRIV 521


>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +1

Query: 199 DNSENERGDSASRPSKTTCSNVPASDPKPQWMGENELESFKIECDEAENMTCIAHETFSQ 378
           DN E+    S SRP KT  S   +S+ +       E    ++E   A N TC A E  +Q
Sbjct: 508 DNEEHV-SLSYSRPDKTLRSTSTSSENEISKSNPREPPETQVEQVLATNETCSAEERLAQ 566

Query: 379 KTILVKK 399
            T  +++
Sbjct: 567 LTAALQQ 573


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 601 WNDVAIGFYPTSKSLFHYGVELPTSCTEKNS 693
           +N+ A G+ P+SK  F Y +   T CTE ++
Sbjct: 905 YNNWAPGWVPSSKDTFEYTIGEITDCTEAST 935


>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 454 LKNMYGLRSTQIMWLHRLANSASQVIRIRGLDIKASS-PEIIQSIVQL 594
           L+N+  L      WLH L      + R++ LD++ +S  +++ S+V L
Sbjct: 610 LRNLQFLGLRYCNWLHTLPKGIGNLHRLQTLDLRGTSLHQVLPSLVNL 657


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 379  KTILVKKNFTMQKQSFWWSTFADHSLKNMYGLRSTQIMWLHRLANSASQVIRIRGL 546
            +TI+VK +FT    S  WS+     +  + G     I W+  L +S+   + + G+
Sbjct: 1050 QTIIVKLDFTKAFDSVIWSSL--FKILAVRGFPENWISWIKGLLSSSKSAVLLNGV 1103


>05_03_0001 -
           7269231-7269436,7269536-7270100,7270600-7270821,
           7270913-7271155,7271227-7271481,7272017-7272370,
           7273082-7273164,7273250-7273630,7273874-7274027
          Length = 820

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 172 PGICECKPTDNSENERGDSASRP-SKTTCSNVPASDPKPQWMGENELESFKIECDEAENM 348
           PG      +  ++ E G++  R  ++       A   KP+   E E E F +E  E++  
Sbjct: 41  PGALALLESPTADREEGEAPRRSGAEQGARRAAAGSEKPEGSEEAEDEEFLVEEYESDGE 100

Query: 349 TCIAHE 366
            C+  E
Sbjct: 101 VCVRRE 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,029
Number of Sequences: 37544
Number of extensions: 418789
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)