Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_L06
(784 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 37 0.021
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 34 0.11
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_6568| Best HMM Match : Collagen (HMM E-Value=6.4e-10) 33 0.20
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 33 0.34
SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18) 33 0.34
SB_43391| Best HMM Match : WGR (HMM E-Value=9.7) 33 0.34
SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 32 0.46
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 32 0.46
SB_22116| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_56442| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_12795| Best HMM Match : Collagen (HMM E-Value=0.04) 31 1.4
SB_25456| Best HMM Match : Collagen (HMM E-Value=1.3e-09) 31 1.4
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12) 30 1.8
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 30 1.8
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 30 1.8
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_30076| Best HMM Match : Collagen (HMM E-Value=8.9e-07) 30 2.4
SB_21931| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 29 3.2
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05) 29 4.2
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 29 4.2
SB_7373| Best HMM Match : Collagen (HMM E-Value=9.3e-13) 29 4.2
SB_56276| Best HMM Match : Sod_Fe_C (HMM E-Value=6.6) 29 5.6
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06) 29 5.6
SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09) 28 7.4
SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09) 28 7.4
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 28 7.4
SB_51822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 28 9.8
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 28 9.8
SB_1972| Best HMM Match : HAMP (HMM E-Value=1.1) 28 9.8
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_10732| Best HMM Match : Collagen (HMM E-Value=0.029) 28 9.8
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 28 9.8
>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 660
Score = 36.7 bits (81), Expect = 0.021
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPGICECKPTDNSENERGDSA-SRPSKTTCSNVPASDPKPQWM 294
K D G++GEKGDRG PG G + +D ++ + + +T N P +P +
Sbjct: 133 KGDPGVRGEKGDRGIPGVGGSVIAQKSDTGDDGKEPIVYPKEERTGSINAPGIRVEPSSL 192
Query: 295 GENELESFKIEC 330
NE + C
Sbjct: 193 TVNENAAATFTC 204
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDS 228
G +GE G RG PG PG + D S ERG++
Sbjct: 229 GKRGETGPRGRPGEPGADGVRGPDGSTGERGET 261
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGD 225
G GE G G PGPPG+ E GD
Sbjct: 882 GFPGESGANGLPGPPGLAGSPGPRGPNGEPGD 913
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDS 228
GL GE+G G PGP G T RGD+
Sbjct: 42 GLPGERGTGGVPGPKGKQGAPGTIGFPGSRGDT 74
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDS 228
G +GE G RG PG PG + D S ERG++
Sbjct: 229 GKRGETGPRGRPGEPGADGVRGPDGSTGERGET 261
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDS 228
GL GE+G G PGP G T RGD+
Sbjct: 42 GLPGERGTGGVPGPKGKQGAPGTIGFPGSRGDT 74
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 33.5 bits (73), Expect = 0.20
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 127 AGLKGEKGDRGYPGPPG 177
+GL+G+KGDRG PGP G
Sbjct: 1417 SGLRGDKGDRGLPGPSG 1433
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 109 ISCKIDAGLKGEKGDRGYPGPPG 177
IS K G+KG+KG +G GPPG
Sbjct: 322 ISFKGPQGMKGDKGTKGARGPPG 344
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSK 246
K + G +GEKG+ G PG PG + + + ERG+ ++ K
Sbjct: 368 KGEPGKQGEKGEEGRPGLPG---AQGIEGPKGERGEPGNQGLK 407
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 139 GEKGDRGYPGPPGICECKP 195
GEKG G+PGPPG + P
Sbjct: 620 GEKGPTGFPGPPGDSDYGP 638
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPGI 180
K + G KG++G G PGPPG+
Sbjct: 745 KGEKGAKGQQGGIGNPGPPGL 765
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 100 PDFISCKIDAGLKGEKGDRGYPGPPGICECKPTDNSENERG 222
P + K DAG+ G++G G PG PG K + + G
Sbjct: 1132 PGSLGEKGDAGIPGQRGLTGNPGLPGAQGLKGEPGRDGQNG 1172
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 127 AGLKGEKGDRGYPGPPGICECKPTDNSENERGDSASR 237
AGL G KG+ G PG G K + RGD R
Sbjct: 1390 AGLDGPKGEPGLPGRDGPAGEKGSPGLSGLRGDKGDR 1426
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Frame = +1
Query: 130 GLKGEKGDRGYP---GPPG 177
G +GEKGD G+P GPPG
Sbjct: 1476 GPRGEKGDSGFPGINGPPG 1494
>SB_6568| Best HMM Match : Collagen (HMM E-Value=6.4e-10)
Length = 106
Score = 33.5 bits (73), Expect = 0.20
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 112 SCKIDAGLKGEKGDRGYPGPPGI 180
SC+++ G+ G KG++G+PGP G+
Sbjct: 4 SCELNNGIMGLKGNQGFPGPMGL 26
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 32.7 bits (71), Expect = 0.34
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQWMGE 300
GL G+KGD+G PG PG + RGD R P D P GE
Sbjct: 385 GLGGQKGDQGMPGKPGNPGAAGLRGAPGARGDYGERGE----PGAPGRDGAPGAQGE 437
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSK 246
G +G+ G+RG PG PG RG+ + K
Sbjct: 412 GARGDYGERGEPGAPGRDGAPGAQGERGPRGEQGKQGEK 450
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 130 GLKGEKGDRGY---PGPPGICECKPTDNSENERGD 225
GL G++GDRG GPPG+ ++ RGD
Sbjct: 121 GLPGKRGDRGTPGAKGPPGLAGEPGEPGTQGPRGD 155
>SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18)
Length = 427
Score = 32.7 bits (71), Expect = 0.34
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 112 SCKIDAGLKGEKGDRGYPGPPGI 180
SC+++ G+ G KG++G+PGP G+
Sbjct: 105 SCELNNGIIGLKGNQGFPGPMGL 127
>SB_43391| Best HMM Match : WGR (HMM E-Value=9.7)
Length = 247
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 223 DSASRPSKTTCSNVPASDPKPQWMGENELESFKIECDEAENMTCIAHETFSQKTIL 390
D SRPS+ +C+++ A+DP Q E+ +++ E+E M+ + FS +L
Sbjct: 131 DEQSRPSRASCAHLHATDPAAQTAMESSFHE-RLDSIESEGMSPLDLRRFSGLDLL 185
>SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 223 DSASRPSKTTCSNVPASDPKPQWMGENELESFKIECDEAENMTCIAHETFSQKTIL 390
D SRPS+ +C+++ A+DP Q E+ +++ E+E M+ + FS +L
Sbjct: 397 DEQSRPSRASCAHLHATDPAAQTAMESSFHE-RLDSIESEGMSPLDLRRFSGLDLL 451
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 109 ISCKIDAGLKGEKGDRGYPGPPGICECKPTDNSENERGDSASR 237
I+CK G +GE G +G PGP G K E +G R
Sbjct: 110 ITCKSRRGKRGEPGPQGPPGPQGPTGAKGDQGPEGIQGPQGIR 152
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 313 IQVHSHPSTAALDLMPAHCYRLFSKVDLPNLLFHSLN 203
++VH HPS+ DL+ H Y K D + FH N
Sbjct: 268 VEVHFHPSSPKYDLVEVHFYPSNHKCDSVEVTFHPSN 304
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 313 IQVHSHPSTAALDLMPAHCYRLFSKVDLPNLLFHSLN 203
++VH HPS D + Y L K D + F+ LN
Sbjct: 142 VEVHFHPSNPKCDSVEVTFYPLNPKCDSVEVTFYPLN 178
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 313 IQVHSHPSTAALDLMPAHCYRLFSKVDLPNLLFHSLN 203
++VH HPS D + Y L K D + F+ LN
Sbjct: 198 VEVHFHPSNPKCDSVEVTFYPLNPKCDSVEVTFYPLN 234
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 313 IQVHSHPSTAALDLMPAHCYRLFSKVDLPNLLFHSLNY 200
++VH HPS D + H + K DL + F+ N+
Sbjct: 254 VEVHFHPSNPKCDSVEVHFHPSSPKYDLVEVHFYPSNH 291
>SB_22116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 31.5 bits (68), Expect = 0.80
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 124 DAGLKGEKGDRGYPGPPG 177
DAG GEKG RG PGP G
Sbjct: 8 DAGKPGEKGSRGPPGPAG 25
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 31.5 bits (68), Expect = 0.80
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +1
Query: 130 GLKGEKGDRGYPGP 171
G KGEKGDRG PGP
Sbjct: 3266 GAKGEKGDRGLPGP 3279
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERG 222
G KG KGD G+PG PG + E ++G
Sbjct: 3740 GEKGGKGDPGFPGLPGQAGLRGLQGPEGQKG 3770
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPG 177
GLKG KGD+G+PG G
Sbjct: 3325 GLKGIKGDKGFPGMVG 3340
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 100 PDFISCKIDAGLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSK-TTCSNVPASD 276
P+ I + KG+KG+RG+PG G + E+G++ + S+ +T P
Sbjct: 3673 PERIDNQTLLAAKGDKGERGFPGNNGGKGERGAQGPRGEKGNTGAPGSQGSTGPRGPIGQ 3732
Query: 277 P 279
P
Sbjct: 3733 P 3733
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 124 DAGLKGEKGDRGYPGPPGICECKPTDNSENERG 222
D G G KGD+G GP GI K + E G
Sbjct: 3636 DVGAAGAKGDKGDVGPVGIRGFKGNKGMKGEVG 3668
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 127 AGLKGEKGDRGYPGPPGI 180
AG +GEKG +G PG PG+
Sbjct: 3736 AGSQGEKGGKGDPGFPGL 3753
>SB_56442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 140 ERKATEDIPVPLEFASVNQQIIQRMKEEIRQVDLRKQPVAMCRHQIQSRSGWVRMNLNLS 319
E TED P P+ A V++ ++R K + + V R + C H+ +++G++ +NL+
Sbjct: 24 ENVTTEDNPDPIP-ADVSKGRVERTKFQAKGVFERWTEIN-CLHKTAAKTGFIASRINLN 81
Query: 320 K 322
K
Sbjct: 82 K 82
>SB_12795| Best HMM Match : Collagen (HMM E-Value=0.04)
Length = 181
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPG 168
K D G++GEKGDRG PG
Sbjct: 133 KGDPGVRGEKGDRGIPG 149
>SB_25456| Best HMM Match : Collagen (HMM E-Value=1.3e-09)
Length = 386
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPG 177
K D G++G KGD+G PGP G
Sbjct: 329 KGDQGVQGVKGDQGVPGPQG 348
>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
Length = 567
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSKTTCS 258
G G+KGDRG GP G K + E G ++P TT S
Sbjct: 245 GAVGQKGDRGERGPQGPPGPKGPIGPKGEPGPPLTKPKITTGS 287
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERG 222
GL G+ G RG GPPG+ + +E RG
Sbjct: 153 GLTGQTGPRGPTGPPGLQGVRGAPGNEGARG 183
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGI 180
G KG +G+RG GPPGI
Sbjct: 540 GAKGSRGERGRVGPPGI 556
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 124 DAGLKGEKGDRGYPGPPGICECKPTDNSENERGD 225
D G +G +G++G GPPG+ TD RG+
Sbjct: 865 DKGNRGPRGEKGEQGPPGVA---GTDGPPGPRGN 895
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 97 GPDFISCKIDAGLKGEKGDRGYPGPPGICECKPTDNSENERGD 225
GPD + AG+KG G G G PG+ + +D +RG+
Sbjct: 75 GPD--PNDLAAGIKGSNGAPGPRGSPGLPGPRGSDGPRGQRGE 115
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +1
Query: 124 DAGLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQWMGE- 300
D G+ G +G+ G G PG+ + T ERG S D + GE
Sbjct: 249 DRGILGVQGEPGKDGSPGLKGTRGTRGKRGERGRKGDMCDSEE-SEEGECDSEESEEGEC 307
Query: 301 NELESFKIECD--EAENMTCIAHET 369
+ ES + ECD E+E C + E+
Sbjct: 308 DSEESEEGECDSEESEEGECDSEES 332
>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 127 AGLKGEKGDRGYPGPPG 177
+G KGE GD+G PG PG
Sbjct: 245 SGSKGESGDKGQPGKPG 261
>SB_30076| Best HMM Match : Collagen (HMM E-Value=8.9e-07)
Length = 198
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGD 225
GLKG+KGD+G G G+ K + ++GD
Sbjct: 107 GLKGDKGDKGDQGIQGLKGDKGDKGEKGDKGD 138
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSK 246
G +G KGD+G G GI K + E+GD + K
Sbjct: 104 GARGLKGDKGDKGDQGIQGLKGDKGDKGEKGDKGDQGLK 142
>SB_21931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 661 ELPTSCTEKNSTTEPCEYVXIIMXTDMVGRLPITDIYF 774
E+PTS + T P Y ++ T ++GR P+ ++
Sbjct: 10 EMPTSTRYSQAVTHPSTYRALLSLTSVIGREPVLSKWY 47
>SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +1
Query: 196 TDNSENERGDSASRPSKTTCSNV-PASDPKPQWMGENELESFKIECDEAENMTCIAHETF 372
+D N+ G S+++ T+ S+ P S P + +E F + T +HE
Sbjct: 31 SDGFANDAGSSSAKQHPTSPSSASPRSSPTRKAGLRRSVEIFS-----DSDSTDASHEIG 85
Query: 373 S--QKTILVKKNFTMQKQSFWWSTFADHSL 456
S Q T VK+ F+ + W S+F+D L
Sbjct: 86 SPRQHTTTVKRQFSRRFMRLWSSSFSDSHL 115
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 124 DAGLKGEKGDRGYPGPPG 177
D G +GE+G G PGPPG
Sbjct: 966 DPGPEGERGQSGPPGPPG 983
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSK 246
GL GE G G PGP G + +RG+ +R K
Sbjct: 227 GLVGEPGPEGEPGPVGPTGVPGLPGVKGDRGEQGARGEK 265
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 124 DAGLKGEKGDRGYPGPPGI 180
+ G G KG +G PGPPG+
Sbjct: 210 EPGAAGAKGAKGQPGPPGL 228
Score = 27.9 bits (59), Expect = 9.8
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQW--MGEN 303
G G+ G G PGP G + E ERG S P P P P W G N
Sbjct: 944 GKYGDDGLEGSPGPRGPIGPQGDPGPEGERGQSGP-PG-------PPGPPGPPWQVQGTN 995
Query: 304 ELESFKIECDEAENMT---CIAHET 369
L+ ++EC + N CI T
Sbjct: 996 FLK-MRVECVVSYNTLGSFCITQRT 1019
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQ 288
G KG+KGD+G G PGI + E G + K P P P+
Sbjct: 80 GPKGDKGDKGDTGAPGIDGQPGPQGEKGETGPQGEQGPKGDTG--PQGQPGPE 130
>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
Length = 510
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPG 177
GL+G KG+RG PG PG
Sbjct: 240 GLQGPKGERGPPGAPG 255
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +1
Query: 127 AGLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSK-----TTCSNVPASDPKPQW 291
A L+G KGD+G G + + + ++GD ++ K T V + P PQ
Sbjct: 343 ASLQGPKGDKGDKDDKGDQGMQGVKDEKGDKGDQGAQGVKGNFIGTITFTVSHNSPSPQ- 401
Query: 292 MGENELESFKIECDEAENMTCI-AHETFSQKTILVKKN 402
+ ++ +F IE + A N + +++ S +++ KN
Sbjct: 402 --KIQVYAFGIEGETAANYQVMSSNQVGSSWGVIMPKN 437
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPGICECKP-TDNSENERGDSASRPSKTTCSNVPASDP 279
K + G KG+ G RG G PG P + S E +AS ++ CS + + DP
Sbjct: 181 KGERGPKGDVGPRGLKGEPGRIRNAPRAEISPRELNVNASASAQLNCS-IISGDP 234
>SB_7373| Best HMM Match : Collagen (HMM E-Value=9.3e-13)
Length = 456
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 118 KIDAGLKGEKGD---RGYPGPPGICECKPTDNSENERGDSASRPSK 246
K D GLKG+KGD G G PG+ K + +G++ + K
Sbjct: 291 KGDPGLKGDKGDTGANGTAGAPGVKGDKGDTGASGAKGEAGVKGDK 336
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPGICECKPTDNSENERG 222
K +AG+KG+KGD+G G G + + ++ E+G
Sbjct: 327 KGEAGVKGDKGDQGVMGAKGDQGIQGFNGTKGEKG 361
>SB_56276| Best HMM Match : Sod_Fe_C (HMM E-Value=6.6)
Length = 196
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 163 PGPPGICECKPTDNSENERGDSAS 234
P PPGI KPT N GDS +
Sbjct: 41 PRPPGIESSKPTQNLRTHAGDSGN 64
>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 226 SASRPS--KTTCSNV-PASDPKPQWMGENELESFKIECDEAEN 345
S+S PS +T N+ P S P P W N LES ++ DE ++
Sbjct: 510 SSSAPSDRSSTSGNILPPSTP-PMWRKHNSLESLRLPGDEIDS 551
>SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06)
Length = 434
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPG 177
G KG+KGDRG PG G
Sbjct: 201 GAKGDKGDRGKPGETG 216
>SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPG 177
K DAG G G +G PGPPG
Sbjct: 88 KGDAGYDGVDGFKGLPGPPG 107
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSK 246
G +G GDRG GPPG E G R SK
Sbjct: 5 GSRGTPGDRGPRGPPGEQGFSGVKGKEGRDGVKGERGSK 43
>SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
Length = 323
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 436 YSTRKIVFAS*NFSLLKLFFAKTFREQCTSYFL 338
Y T I+ NF L +F KTFR + ++YFL
Sbjct: 20 YLTESIITIVFNFLALAVFHQKTFRLKKSNYFL 52
>SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09)
Length = 234
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 127 AGLKGEKGDRGYPGPPGI 180
+G +G KG +G PGPPG+
Sbjct: 48 SGPQGRKGFKGEPGPPGL 65
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPG 177
GL G +G +G PGPPG
Sbjct: 1786 GLAGPQGPKGMPGPPG 1801
>SB_51822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 118 KIDAGLKGEKGD---RGYPGPPGICECKPTDNSENERGDS 228
K D GLKG+KGD G G PG+ K + +G++
Sbjct: 701 KGDPGLKGDKGDTGANGTAGAPGVKGDKGDTGASGAKGEA 740
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 127 AGLKGEKGDRGYPGPPG 177
AGL G+ G++GY G PG
Sbjct: 72 AGLVGDSGEKGYRGAPG 88
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPG 177
K D+G G+ G +G PGPPG
Sbjct: 138 KGDSGRPGQDGRQGPPGPPG 157
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 199 DNSENERGDSASRPSKTTCSNVPASDPKPQWMGENELESFKIECDEAEN 345
DN ++RG + SR + P + P E E E K+E +++ N
Sbjct: 264 DNRRDDRGRNRSRKDEDELEEEPYVEDDPDADDEKEKEKEKLEREKSSN 312
>SB_1972| Best HMM Match : HAMP (HMM E-Value=1.1)
Length = 232
Score = 27.9 bits (59), Expect = 9.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 65 IVY*IYHWLXVAPISSVVKSM 127
++Y +YHWL P+S +++ +
Sbjct: 121 VLYLVYHWLLTKPLSKIIEHL 141
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Frame = +1
Query: 130 GLKGEKGDRG---YPGPPGI 180
G KG++GD G +PGPPG+
Sbjct: 256 GQKGDRGDMGPPGHPGPPGV 275
>SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASR 237
GL G+KG +G PGP G + PT S E G+ +R
Sbjct: 191 GLMGDKGVQGLPGPKG--DRGPTGLS-GENGEPGAR 223
>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 118 KIDAGLKGEKGDRGYPGPPG 177
K DAG+ G KG G PGP G
Sbjct: 236 KGDAGITGPKGTPGDPGPTG 255
>SB_10732| Best HMM Match : Collagen (HMM E-Value=0.029)
Length = 367
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPAS 273
G+KG+KGD+G G G+ T + + +A RP +T S+ ++
Sbjct: 120 GVKGDKGDKGDQGAQGVKGDPLTYDDLTPQLINALRPGQTLWSSTSSN 167
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 130 GLKGEKGDRGYPGPPG 177
G G KGDRG GPPG
Sbjct: 485 GAAGPKGDRGPAGPPG 500
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,904,971
Number of Sequences: 59808
Number of extensions: 503219
Number of successful extensions: 2164
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2070
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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