Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L06
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.79 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 184 ECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQWMGENELES 315
           +C+P + +    G++A     ++ S   ASD  P     NE E+
Sbjct: 241 KCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEA 284


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 145 KGDRGYPGPPGICECKPTDNSENERGDSASRP 240
           KGD  +  P G C CKP   ++ E+ +    P
Sbjct: 235 KGDGKWYLPSGGCHCKPGYQADVEKQECTECP 266


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 15/75 (20%), Positives = 32/75 (42%)
 Frame = +1

Query: 517 ASQVIRIRGLDIKASSPEIIQSIVQLLTWNDVAIGFYPTSKSLFHYGVELPTSCTEKNST 696
           A Q   +R  + +++   +   ++Q   + DV +     S       +   +S  +K   
Sbjct: 7   AGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLL 66

Query: 697 TEPCEYVXIIMXTDM 741
           + PC++  IIM  D+
Sbjct: 67  SNPCKHPTIIMPQDV 81


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 336 SRKYDVHCSRNVFAKNN-FSKEKF 404
           +RKYDV     +FA N  ++K+ +
Sbjct: 424 ARKYDVQTDSIIFANNQPYTKDSY 447


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 478 NVIHTCSSRNGLQTYSTRKIVFAS*NFSLLKL-FFAKTFREQCTSY 344
           N  HTC ++NG  T     I+ A     L+KL    K++  +C  Y
Sbjct: 20  NSPHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIY 65


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/55 (23%), Positives = 18/55 (32%)
 Frame = +1

Query: 124 DAGLKGEKGDRGYPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQ 288
           DA L         PG P       T  +      + +  +  T  N  A+ P PQ
Sbjct: 638 DASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQ 692


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 599 HGMMLQLVFILLQ 637
           H M LQ +FILLQ
Sbjct: 3   HRMWLQQIFILLQ 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,251
Number of Sequences: 438
Number of extensions: 4568
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)