Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L04
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              141   2e-46
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             31   0.81 
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        30   1.9  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   5.7  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       28   7.6  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  141 bits (341), Expect(2) = 2e-46
 Identities = 68/96 (70%), Positives = 84/96 (87%)
 Frame = +3

Query: 105 ISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVREL 284
           ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP+P+++AFQKIQ RLVREL
Sbjct: 26  ISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVPQIRAFQKIQTRLVREL 85

Query: 285 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 392
           EKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 86  EKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 62.5 bits (145), Expect(2) = 2e-46
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = +3

Query: 504 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 605
           HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
 Frame = +3

Query: 135 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 299
           + + K  L+E+ I ++K+ E   + + KS       PKLKA Q    +   +  KK    
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320

Query: 300 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 392
               K V+       LP+ +H+   AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 589 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASY 410
           T+R  ++ ++DW ++  C    CW +S  T+ S     LT +++P  +  + K    A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
 Frame = +3

Query: 51   VXXSSKRAVLRRIPSSPSISQALVELETNSDLKAQLRE----LYITKAKEIELHNKKSII 218
            V  S + +VL     + +  ++    E N+ LK +L E    L +T+ +E E+ N K + 
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLEEDNAILKRKLDEKETALKVTQDREREM-NDKLMA 1731

Query: 219  IYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 377
            +YV M KL++ Q        ELEK+      ++   ++I P K S  T VA  +
Sbjct: 1732 LYVNMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 139  PTSKPNFGSFTLQKLKKLNYTIRS 210
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 344 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 204
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,932
Number of Sequences: 59808
Number of extensions: 402523
Number of successful extensions: 1201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)