Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_L04
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 229 1e-60
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 29 3.8
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 29 3.8
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 29 3.8
U80032-2|AAM15555.1| 643|Caenorhabditis elegans Osmotic stress ... 28 5.0
AY360470-1|AAR12229.1| 643|Caenorhabditis elegans osmotic stres... 28 5.0
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 6.6
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 6.6
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 229 bits (561), Expect = 1e-60
Identities = 105/170 (61%), Positives = 139/170 (81%), Gaps = 1/170 (0%)
Frame = +3
Query: 105 ISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVREL 284
+SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P+LKAF KI LVREL
Sbjct: 23 VSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQLKAFHKIHPALVREL 82
Query: 285 EKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 461
EKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+DA L++LV+PAE+VG+
Sbjct: 83 EKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGR 142
Query: 462 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 611
RIRVKLDG ++ KVHLDK+ QT + HK+ F SVY+KLTG++VTFEFP+P
Sbjct: 143 RIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +1
Query: 76 C*GGFLRVPRSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN 240
C G+ ++ S S PT T KP S L K N +I S ++S CRCLN
Sbjct: 273 CDSGYSQIADSNGARCESCPTNTYKPKGQS--LCKSCPSN-SISSEAASSCRCLN 324
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +1
Query: 76 C*GGFLRVPRSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN 240
C G+ ++ S S PT T KP S L K N +I S ++S CRCLN
Sbjct: 273 CDSGYSQIADSNGARCESCPTNTYKPKGQS--LCKSCPSN-SISSEAASSCRCLN 324
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 121 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 231
S+SK T F SF Q ++K YT S SSS R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +1
Query: 76 C*GGFLRVPRSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN 240
C G+ ++ S S PT T KP S L K N +I S ++S CRCLN
Sbjct: 273 CDSGYSQIADSNGARCESCPTNTYKPKGQS--LCKSCPSN-SISSEAASSCRCLN 324
>U80032-2|AAM15555.1| 643|Caenorhabditis elegans Osmotic stress
resistant protein 1 protein.
Length = 643
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 66 KRAVLRRIPSSPSISQALVELETNSDLKAQ-LRELYITKAKEIELHNKKSIIIYVPMPKL 242
+R + RR+ SSP + + L E S L Q +R+ ++K + + ++++ +
Sbjct: 279 RRDLARRLKSSPRLKELLQNAEVQSLLSYQRMRDSPLSKRRPLAMNDEDESAFRAMEARA 338
Query: 243 KAFQKIQIRL 272
K QK Q+ L
Sbjct: 339 KLDQKSQLVL 348
>AY360470-1|AAR12229.1| 643|Caenorhabditis elegans osmotic stress
resistance protein protein.
Length = 643
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 66 KRAVLRRIPSSPSISQALVELETNSDLKAQ-LRELYITKAKEIELHNKKSIIIYVPMPKL 242
+R + RR+ SSP + + L E S L Q +R+ ++K + + ++++ +
Sbjct: 279 RRDLARRLKSSPRLKELLQNAEVQSLLSYQRMRDSPLSKRRPLAMNDEDESAFRAMEARA 338
Query: 243 KAFQKIQIRL 272
K QK Q+ L
Sbjct: 339 KLDQKSQLVL 348
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 471 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 602
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 471 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 602
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,517,690
Number of Sequences: 27780
Number of extensions: 297736
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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