Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_L03
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    40   2e-05
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    26   0.30 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    26   0.30 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.53 
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   4.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 158  RGIKGDQGSIGPPGIPGLQGDYGADGLEGRIGLPGVPGDWGERGDFGDKGERGTEGSYG- 334
            +G++G Q + G  G+ G+QG  G  G++G  G+PG+    G +  FG +G +G    YG 
Sbjct: 842  QGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGLL--QGVQQVFG-QGVQGMNVPYGM 898

Query: 335  RRGDEGPQ 358
            +RG  G Q
Sbjct: 899  QRGQSGGQ 906



 Score = 33.9 bits (74), Expect = 0.001
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 296 GDKGERGTEGSYGRRGDEGPQGLPGLEGVFGFPGL 400
           G +G +  +G  G +G +G QG+ G++GV G PGL
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGL 877



 Score = 31.5 bits (68), Expect = 0.006
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 302 KGERGTEGSYGRRGDEGPQGLPGLEGVFGFPGLDG 406
           +G +G + + G +G +G QG+ G++GV G  G+ G
Sbjct: 842 QGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 30.3 bits (65), Expect = 0.014
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 308 ERGTEGSYGRRGDEGPQGLPGLEGVFGFPGLDG 406
           ++G +G    +G +G QG+ G++GV G  G+ G
Sbjct: 841 QQGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQG 873



 Score = 29.5 bits (63), Expect = 0.025
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +2

Query: 281  ERGDFGDKGERGTEGSYGRRGDEGPQGLPGLEGVFGFPGLDGCSXXXXXXXXXXXXXXXX 460
            ++G  G +  +G +G  G +G +G QG+ G++GV G   L G                  
Sbjct: 841  QQGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGL--LQGVQQVFGQGVQGMNVPYGM 898

Query: 461  XRGIPG--PYGEKGLQGLAGEGGVNSRGAKGDQGDGG 565
             RG  G   +    +QG+A  G  +   A G Q  GG
Sbjct: 899  QRGQSGGQTWSNSQVQGVAVPG--SGIVASGQQHAGG 933


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 188 GPPGIPGLQGDYGADGLEGR 247
           GPPG+PG  GD+     E R
Sbjct: 333 GPPGVPGDHGDHAPKQTEVR 352



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 251 GLPGVPGDWGE 283
           G PGVPGD G+
Sbjct: 333 GPPGVPGDHGD 343



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 194 PGIPGLQGDYG 226
           PG PG+ GD+G
Sbjct: 332 PGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 188 GPPGIPGLQGDYGADGLEGR 247
           GPPG+PG  GD+     E R
Sbjct: 333 GPPGVPGDHGDHAPKQTEVR 352



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 251 GLPGVPGDWGE 283
           G PGVPGD G+
Sbjct: 333 GPPGVPGDHGD 343



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 194 PGIPGLQGDYG 226
           PG PG+ GD+G
Sbjct: 332 PGPPGVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 188 GPPGIPGLQGDY 223
           GPPG+PG  GD+
Sbjct: 272 GPPGVPGDHGDH 283



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 251 GLPGVPGDWGE 283
           G PGVPGD G+
Sbjct: 272 GPPGVPGDHGD 282



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 194 PGIPGLQGDYG 226
           PG PG+ GD+G
Sbjct: 271 PGPPGVPGDHG 281


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 272 LPAHRVNQFFLQVHLLRSPLEGLGCPEGLCFL 177
           LPA R+N         +SPL    CP+GL  L
Sbjct: 48  LPAPRINS--------KSPLLSCACPDGLKLL 71


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 272 LPAHRVNQFFLQVHLLRSPLEGLGCPEGLCFL 177
           LPA R+N         +SPL    CP+GL  L
Sbjct: 48  LPAPRINS--------KSPLLSCACPDGLKLL 71


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 164  IKGDQGSIGPPGIPGLQGDYGADGLEGRIGLPGVP 268
            +K  +    P GIPG  G      +EG   LP  P
Sbjct: 1126 LKPQKPFTSPGGIPGPNGIKMPSFMEGMPHLPFTP 1160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,211
Number of Sequences: 438
Number of extensions: 2986
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)