Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K24
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.56 
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   5.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 347  VPLYIHGFTALPDDDWGHCRDPVHPLPGSLHGGNRSRPIQYYIYYDICHRFNN 505
            VP Y   FT       G+  D   P  G    G  ++      YY+IC+R  N
Sbjct: 867  VPFYGQSFTLTK----GNNHDQGVPSAGPGEAGEYTKQPGMLAYYEICNRIRN 915



 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 425  PGSLHGGNRSRPIQYYIYYDICH 493
            PG    G  +R   +  YY+ICH
Sbjct: 1662 PGPGQAGEYTRAAGFLAYYEICH 1684



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 250  TASSPIWITLLCTMALTLRPSEVS 179
            T +SP W T       T RP+  S
Sbjct: 1046 TTTSPWWTTTTTRRTTTTRPTTTS 1069



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 323  WDRRHAALVPLYIH 364
            WD++   + PLY H
Sbjct: 1596 WDKQTGHVAPLYYH 1609


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 413 VHPLPGS--LHGGNRSRPIQYYIYYDICHRFN 502
           V+P  G+  +   NR   I YY++  I  RFN
Sbjct: 213 VYPFEGAREIVDKNRRGEIFYYMHQQIIARFN 244


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 328 STTRRPGTSVYSWLY 372
           S T R GTS  +WLY
Sbjct: 413 SDTNRFGTSGLAWLY 427


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,687
Number of Sequences: 336
Number of extensions: 3589
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)