Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_K24
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical pr... 55 5e-08
Z82282-2|CAB05274.2| 544|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AF100669-2|AAK39264.1| 546|Caenorhabditis elegans Hypothetical ... 49 3e-06
Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81489-10|CAB04004.2| 337|Caenorhabditis elegans Hypothetical p... 30 1.3
U40800-4|AAO91742.1| 763|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 27 9.1
AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans Na/Ca,K-excha... 27 9.1
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 27 9.1
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 27 9.1
>Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical
protein C51E3.6 protein.
Length = 555
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +3
Query: 333 DTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD-RSNIISTMIFVTGLITW 509
DTPP + + LQ + + A++ +P I+ ++C + R +IS+ +G+ T
Sbjct: 25 DTPPIGIALLYGLQQVMVCVSALLTVPLIMADSMCPGSSIAVLRQTLISSTFVSSGISTI 84
Query: 510 LQATFGCRLPIVQGGTISFLVPTLAILNLPAXKCPEEE 623
+Q FG RL ++QG +++ ++LP C E
Sbjct: 85 IQTLFGMRLALLQGTAFAYVPSVQGFMSLPENTCNATE 122
>Z82282-2|CAB05274.2| 544|Caenorhabditis elegans Hypothetical
protein T07G12.2 protein.
Length = 544
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +3
Query: 309 GNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCM-EETDPDRSNIISTMI 485
G++ + ++D P F LQ L I A++ P+ + LC ET R +I+
Sbjct: 6 GDLHFHVNDVPHKSAIFFFGLQQMLVCISALLVTPYFVSNLLCAGAETTEVRVQLIAATF 65
Query: 486 FVTGLITWLQATFGCRLPIVQGGTISF 566
+G+ T LQ TFG RL I+ G + +F
Sbjct: 66 ISSGIATILQTTFGLRLAILHGPSFAF 92
>AF100669-2|AAK39264.1| 546|Caenorhabditis elegans Hypothetical
protein R11E3.2 protein.
Length = 546
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 297 EARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD-RSNII 473
E ++ + + ++D P + + Q + I ++ IP+++ +C + + + R +I
Sbjct: 3 EEKEDELVHHVNDIPSIPTILLIGFQQMMICISMLLVIPYMMSDMVCPGDKETEIRVQLI 62
Query: 474 STMIFVTGLITWLQATFGCRLPIVQGGTISFL 569
S G+ T LQ TFG RL I+ G + ++L
Sbjct: 63 SASFVTAGIATILQTTFGMRLAILHGPSFAYL 94
>Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical
protein T07G12.5 protein.
Length = 555
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +3
Query: 321 YGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCM-EETDPDRSNIISTMIFVTG 497
+ +++ P + LQ + + +++ IP+++ LC ++ R +IS +G
Sbjct: 6 FHVNEIPSPPSIMLFGLQQMMICLSSLLVIPYVVSDMLCAGDQAMEIRVQLISATFVTSG 65
Query: 498 LITWLQATFGCRLPIVQGGTISFL 569
+ T LQ TFG RL I+ G + +FL
Sbjct: 66 IATILQTTFGMRLSILHGPSFAFL 89
>Z81489-10|CAB04004.2| 337|Caenorhabditis elegans Hypothetical
protein C55A1.8 protein.
Length = 337
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +3
Query: 357 IFMALQHYLTMIGAIVAIPFILCPALCMEETDP 455
I +++ +++ IG + A+P + PA C++ +P
Sbjct: 152 IILSVIYFIIFIGFVAALPHVQAPAACLQALEP 184
>U40800-4|AAO91742.1| 763|Caenorhabditis elegans Hypothetical
protein D2096.12 protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -1
Query: 201 PYDHQKSVLCVVLCNRDPKTRRVTPLSQAL*LLTPQC*SDDNIQPTSCSKCGRVTTDNRF 22
PY+H KS LC R + RR+ + + C + I+ + V T +R
Sbjct: 669 PYNHPKSTLCSQCAFRQQRQRRIAKREREQAKIKVSCLKEYGIEKRESLRNMSVLTKSRI 728
Query: 21 E 19
E
Sbjct: 729 E 729
>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 278 SYIIDAHSPDSVQSDLDHVVVYHGIDPTTIRSQSYV 171
S ++D +PD D D V H I TI++ SY+
Sbjct: 127 SVVMDPRAPDFRSMDSDIQVAEHNITMRTIKNDSYL 162
>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 278 SYIIDAHSPDSVQSDLDHVVVYHGIDPTTIRSQSYV 171
S ++D +PD D D V H I TI++ SY+
Sbjct: 127 SVVMDPRAPDFRSMDSDIQVAEHNITMRTIKNDSYL 162
>Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical
protein F35C12.2a protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 262 HTPLTASSPIWITLLCTMALTLRP 191
+TP+ AS P W TLL T +L P
Sbjct: 53 NTPVNASKPFWKTLLPTCNRSLAP 76
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 138 VWFLGLCYIRPHIRLTSDGRRVNAMVH 218
+W + IRP+ L SDG+R+ ++H
Sbjct: 379 IWLHTVFSIRPNNELNSDGKRLRHVIH 405
>AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans
Na/Ca,K-exchanger protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 262 HTPLTASSPIWITLLCTMALTLRP 191
+TP+ AS P W TLL T +L P
Sbjct: 53 NTPVNASKPFWKTLLPTCNRSLAP 76
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 138 VWFLGLCYIRPHIRLTSDGRRVNAMVH 218
+W + IRP+ L SDG+R+ ++H
Sbjct: 379 IWLHTVFSIRPNNELNSDGKRLRHVIH 405
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 138 VWFLGLCYIRPHIRLTSDGRRVNAMVH 218
+W + IRP+ L SDG+R+ ++H
Sbjct: 379 IWLHTVFSIRPNNELNSDGKRLRHVIH 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,441
Number of Sequences: 27780
Number of extensions: 335398
Number of successful extensions: 934
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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