Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K23
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    26   0.28 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.1  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 421 SVQHRSGDNRK*LPRIYS*NGYCQTCKAWVWNVPSKYRHEVPIPFVMP 564
           S+ +R+  N       Y+ N Y   CK   +N+   Y  ++P+P  +P
Sbjct: 84  SLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNI--NYIEQIPVPVPVP 129


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 469 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 552
           Y+ N Y   CK   +N+   Y  ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 469 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 552
           Y+ N Y   CK   +N+   Y  ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 469 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 552
           Y+ N Y   CK   +N+   Y  ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 188 DWENNVLRLGTNDAQYVEVIH 250
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 386 AATITHGKHYGNQCSTEAEITANN 457
           A+   + K+Y   CSTE  +T  N
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLTKQN 464


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 581 FVLSFVGITNGMGTSCRY 528
           F+LS VG+  G+G   R+
Sbjct: 28  FILSVVGLAIGLGNLWRF 45


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 581 FVLSFVGITNGMGTSCRY 528
           F+LS VG+  G+G   R+
Sbjct: 81  FILSVVGLAIGLGNLWRF 98


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 533 RYLLGTFQTHALQVWQYPFQL*ILGNYLRLSP 438
           R++    + HA  ++QY F + I     R+SP
Sbjct: 350 RHVQAEAEKHAAMLYQYNFNIIISEPTERISP 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,787
Number of Sequences: 438
Number of extensions: 4315
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)