Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_K21
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 33 0.30
05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,536... 32 0.39
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 32 0.52
12_02_1003 - 25183468-25184010,25184295-25184551,25184795-251849... 31 1.2
05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931 31 1.2
12_02_0771 - 23013984-23014358,23015168-23015980 30 2.1
08_02_0005 + 11190901-11191896 29 2.8
01_01_0100 - 755894-756662,757086-757598,758718-761050 29 3.7
01_05_0587 + 23452275-23453759 29 4.8
04_04_0550 - 26187347-26188828 28 6.4
03_06_0361 + 33377781-33378458 28 6.4
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 28 8.5
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 28 8.5
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +1
Query: 442 LKKQKKRNDI-PKVNN-EEPNLSSELRVNEFNIQMISK 549
+ + +KR I PK++N E PNL SE R+NE+ ++ I K
Sbjct: 923 ISEVRKRGGISPKLDNLEVPNLESEERINEYELKYIIK 960
>05_01_0599 +
5368091-5368123,5368212-5368383,5369237-5369335,
5369636-5369748,5369824-5369916,5370081-5370244,
5370328-5370564,5370739-5370883,5370982-5371160,
5371997-5372142,5372239-5372366,5372441-5372614,
5372706-5372735,5373219-5373380,5373460-5373705,
5373733-5373870,5373974-5374174,5374304-5374448,
5374575-5374681,5374830-5374970,5375274-5375539,
5375621-5375745,5375843-5376109,5376250-5376263
Length = 1174
Score = 32.3 bits (70), Expect = 0.39
Identities = 26/94 (27%), Positives = 46/94 (48%)
Frame = +1
Query: 406 LSDVLPTTEFKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLFKKPSS 585
LS TT+ ++ ++KK+ D P V + L+ + + ++ + + I+ LF
Sbjct: 253 LSGQRETTQRQLNAEKKKQTDGPIVESLNKKLAHTHKSITY-LEELMRKIFSGLFMHRYR 311
Query: 586 SPDPEVIKSCQESLLRHGIXYKKCSNYLPDVTLK 687
DPE+ SC +SL + Y S +L D+ LK
Sbjct: 312 DVDPEIRMSCIKSLGIWVVSYP--SLFLQDIYLK 343
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 385 NVGNQRFLSDVLPTTEFKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNI 534
N+ +RF D+ T +L+ Q + + KVNN+ P L +L +E N+
Sbjct: 509 NIYRERFGHDIDLDTNELILRDQPEEAILLKVNNKVPGLGLQLDASELNL 558
>12_02_1003 -
25183468-25184010,25184295-25184551,25184795-25184971,
25185438-25185905,25186720-25186730,25187589-25187599
Length = 488
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 451 QKKRNDIPKVNN-EEPNLSSELRVNEFNIQMISKNIY 558
+K+ PK++N E PNL SE R+NE+ + N Y
Sbjct: 10 RKRGGTSPKLDNLEVPNLESEERINEYELSENIDNYY 46
>05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931
Length = 553
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 451 QKKRNDIPKVNN-EEPNLSSELRVNEFNIQMISKNIY 558
+K+ PK++N E PNL SE R+NE+ + N Y
Sbjct: 469 RKRGGTSPKLDNLEVPNLESEERINEYELSENIDNYY 505
>12_02_0771 - 23013984-23014358,23015168-23015980
Length = 395
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 442 LKKQKKRNDI-PKVNN-EEPNLSSELRVNEFNI 534
+ + +KR I PK++N E PNL SE R+NE+ +
Sbjct: 74 ISEVRKRGGISPKLDNLEVPNLESEERINEYEL 106
>08_02_0005 + 11190901-11191896
Length = 331
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 442 LKKQKKRNDI-PKVNN-EEPNLSSELRVNEFNIQMISKNIY 558
+ + +KR I PK++N E PNL E R+NE+ + N Y
Sbjct: 74 ISEVRKRGGISPKLDNLEVPNLEPEERINEYELSENIDNYY 114
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 442 LKKQKKRNDI-PKVNN-EEPNLSSELRVNEFNIQMISKNIY 558
+ + +KR + PK++N E PNL E R+NE+ + N Y
Sbjct: 806 ISEVRKRGGVSPKLDNLEVPNLEPEERINEYELSENIDNYY 846
>01_05_0587 + 23452275-23453759
Length = 494
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 607 KSCQESLLRHGIXYKKCSNYLPDVTLKLPKL 699
+SCQES++RH + C + PD + LP L
Sbjct: 156 RSCQESMVRHN-PVEACPDDDPDAAVSLPGL 185
>04_04_0550 - 26187347-26188828
Length = 493
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 415 VLPTTEFKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQL 567
VLP EFKVL +Q + +P + ELR + ++ + NI+E L
Sbjct: 184 VLPPFEFKVLGRQLPPHFVPSTSMGS-GWMQELREFDMSVSGVVVNIFEDL 233
>03_06_0361 + 33377781-33378458
Length = 225
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 127 GLSSFTRTVGRAKV*PGGV*FANSCPSASEEI*QLKGSCFANEFNTGSE 273
GL++ ++GR + PGGV +S P A+E I + G A +T E
Sbjct: 97 GLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGE 145
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 472 PKVNN-EEPNLSSELRVNEFNI 534
PK++N E PNL SE R+NE+ +
Sbjct: 926 PKLDNLEVPNLESEERINEYEL 947
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 373 LNKVNVGNQRFLSDVLPTTEFKVLKKQKKRNDIPKVNNEEPNLSSEL 513
LN+V + NQ+ ++ + T+ + KQ N I + LS EL
Sbjct: 458 LNRVKISNQQLITQITKLTDESNIAKQVLTNKIAEAEAVSKVLSDEL 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,325,186
Number of Sequences: 37544
Number of extensions: 305832
Number of successful extensions: 636
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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