Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_K21
(714 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X98093-1|CAA66719.1| 1239|Homo sapiens DNA polymerase gamma prot... 52 3e-06
U74651-1|AAB18268.1| 200|Homo sapiens DNA polymerase gamma prot... 52 3e-06
U60325-1|AAC50712.1| 1239|Homo sapiens DNA polymerase gamma prot... 52 3e-06
D84103-1|BAA12223.1| 1241|Homo sapiens mitochondrial DNA polymer... 52 3e-06
BC050559-1|AAH50559.1| 1239|Homo sapiens POLG protein protein. 52 3e-06
BC042571-1|AAH42571.1| 1239|Homo sapiens polymerase (DNA directe... 52 3e-06
AF497906-1|AAM77583.1| 1240|Homo sapiens polymerase (DNA directe... 52 3e-06
X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein. 33 1.0
U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein. 33 1.0
AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein. 33 1.0
BC105958-1|AAI05959.1| 677|Homo sapiens ECM2 protein protein. 31 4.1
BX537976-1|CAD97940.1| 693|Homo sapiens hypothetical protein pr... 31 5.4
BC107493-1|AAI07494.1| 699|Homo sapiens extracellular matrix pr... 31 5.4
AL157827-4|CAI12589.1| 699|Homo sapiens extracellular matrix pr... 31 5.4
AL137848-1|CAI16693.1| 699|Homo sapiens extracellular matrix pr... 31 5.4
AB011792-1|BAA33958.1| 699|Homo sapiens extracellular matrix pr... 31 5.4
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 30 9.5
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei... 30 9.5
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3... 30 9.5
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3... 30 9.5
>X98093-1|CAA66719.1| 1239|Homo sapiens DNA polymerase gamma
protein.
Length = 1239
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/90 (31%), Positives = 53/90 (58%)
Frame = +1
Query: 445 KKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLFKKPSSSPDPEVIKSCQES 624
++Q+++ P+V + E +LR N +IQM+S+ ++EQ+F + P ++ E
Sbjct: 50 QQQQQQPQQPQVLSSE---GGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEH 106
Query: 625 LLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
L +HG+ + + + LPDV L+LP L G ++
Sbjct: 107 LQKHGL-WGQPAVPLPDVELRLPPLYGDNL 135
>U74651-1|AAB18268.1| 200|Homo sapiens DNA polymerase gamma
protein.
Length = 200
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/90 (31%), Positives = 53/90 (58%)
Frame = +1
Query: 445 KKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLFKKPSSSPDPEVIKSCQES 624
++Q+++ P+V + E +LR N +IQM+S+ ++EQ+F + P ++ E
Sbjct: 50 QQQQQQPQQPQVLSSE---GGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEH 106
Query: 625 LLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
L +HG+ + + + LPDV L+LP L G ++
Sbjct: 107 LQKHGL-WGQPAVPLPDVELRLPPLYGDNL 135
>U60325-1|AAC50712.1| 1239|Homo sapiens DNA polymerase gamma
protein.
Length = 1239
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/90 (31%), Positives = 53/90 (58%)
Frame = +1
Query: 445 KKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLFKKPSSSPDPEVIKSCQES 624
++Q+++ P+V + E +LR N +IQM+S+ ++EQ+F + P ++ E
Sbjct: 50 QQQQQQPQQPQVLSSE---GGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEH 106
Query: 625 LLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
L +HG+ + + + LPDV L+LP L G ++
Sbjct: 107 LQKHGL-WGQPAVPLPDVELRLPPLYGDNL 135
>D84103-1|BAA12223.1| 1241|Homo sapiens mitochondrial DNA polymerase
gamma protein.
Length = 1241
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/90 (31%), Positives = 53/90 (58%)
Frame = +1
Query: 445 KKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLFKKPSSSPDPEVIKSCQES 624
++Q+++ P+V + E +LR N +IQM+S+ ++EQ+F + P ++ E
Sbjct: 52 QQQQQQPQQPQVLSSE---GGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEH 108
Query: 625 LLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
L +HG+ + + + LPDV L+LP L G ++
Sbjct: 109 LQKHGL-WGQPAVPLPDVELRLPPLYGDNL 137
>BC050559-1|AAH50559.1| 1239|Homo sapiens POLG protein protein.
Length = 1239
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/90 (31%), Positives = 53/90 (58%)
Frame = +1
Query: 445 KKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLFKKPSSSPDPEVIKSCQES 624
++Q+++ P+V + E +LR N +IQM+S+ ++EQ+F + P ++ E
Sbjct: 50 QQQQQQPQQPQVLSSE---GGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEH 106
Query: 625 LLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
L +HG+ + + + LPDV L+LP L G ++
Sbjct: 107 LQKHGL-WGQPAVPLPDVELRLPPLYGDNL 135
>BC042571-1|AAH42571.1| 1239|Homo sapiens polymerase (DNA directed),
gamma protein.
Length = 1239
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/90 (31%), Positives = 53/90 (58%)
Frame = +1
Query: 445 KKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLFKKPSSSPDPEVIKSCQES 624
++Q+++ P+V + E +LR N +IQM+S+ ++EQ+F + P ++ E
Sbjct: 50 QQQQQQPQQPQVLSSE---GGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEH 106
Query: 625 LLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
L +HG+ + + + LPDV L+LP L G ++
Sbjct: 107 LQKHGL-WGQPAVPLPDVELRLPPLYGDNL 135
>AF497906-1|AAM77583.1| 1240|Homo sapiens polymerase (DNA directed),
gamma protein.
Length = 1240
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/90 (31%), Positives = 53/90 (58%)
Frame = +1
Query: 445 KKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLFKKPSSSPDPEVIKSCQES 624
++Q+++ P+V + E +LR N +IQM+S+ ++EQ+F + P ++ E
Sbjct: 51 QQQQQQPQQPQVLSSE---GGQLRHNPLDIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEH 107
Query: 625 LLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
L +HG+ + + + LPDV L+LP L G ++
Sbjct: 108 LQKHGL-WGQPAVPLPDVELRLPPLYGDNL 136
>X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.
Length = 6669
Score = 33.1 bits (72), Expect = 1.0
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = +1
Query: 367 SFLNKVNVGNQRFLSDVLPTTEFKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMIS 546
S L+ + NQ+ L+ + E +K K +P+ +++PN + LRV + NI +
Sbjct: 4721 STLSLTHAKNQKHLASHIKYRE--EYEKFKALYTLPRSVDDDPNTARCLRVGKLNIDRLY 4778
Query: 547 KNIYEQLFKKPSSSPDPEVIKSCQES 624
+++YE+ K PD + + ++S
Sbjct: 4779 RSVYEKNKMKIHIVPDMVEMVTAKDS 4804
>U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein.
Length = 3007
Score = 33.1 bits (72), Expect = 1.0
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = +1
Query: 367 SFLNKVNVGNQRFLSDVLPTTEFKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMIS 546
S L+ + NQ+ L+ + E +K K +P+ +++PN + LRV + NI +
Sbjct: 1152 STLSLTHAKNQKHLASHIKYRE--EYEKFKALYTLPRSVDDDPNTARCLRVGKLNIDRLY 1209
Query: 547 KNIYEQLFKKPSSSPDPEVIKSCQES 624
+++YE+ K PD + + ++S
Sbjct: 1210 RSVYEKNKMKIHIVPDMVEMVTAKDS 1235
>AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.
Length = 2802
Score = 33.1 bits (72), Expect = 1.0
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = +1
Query: 367 SFLNKVNVGNQRFLSDVLPTTEFKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMIS 546
S L+ + NQ+ L+ + E +K K +P+ +++PN + LRV + NI +
Sbjct: 854 STLSLTHAKNQKHLASHIKYRE--EYEKFKALYTLPRSVDDDPNTARCLRVGKLNIDRLY 911
Query: 547 KNIYEQLFKKPSSSPDPEVIKSCQES 624
+++YE+ K PD + + ++S
Sbjct: 912 RSVYEKNKMKIHIVPDMVEMVTAKDS 937
>BC105958-1|AAI05959.1| 677|Homo sapiens ECM2 protein protein.
Length = 677
Score = 31.1 bits (67), Expect = 4.1
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 373 LNKVNVGNQRFLSDVLPTTEFKVLKKQKKRN----DIPKVNNEEPNLSSELRVNEFNIQM 540
L ++++ S + FK+LKK + N ++ ++ ++ P+ EL+VNE N+Q
Sbjct: 347 LERLDLSKNNITSSGIGPKAFKLLKKLMRSNMDGNNLIQIPSQLPSTLEELKVNENNLQA 406
Query: 541 ISKNIYEQL 567
I + L
Sbjct: 407 IDEESLSDL 415
>BX537976-1|CAD97940.1| 693|Homo sapiens hypothetical protein
protein.
Length = 693
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 373 LNKVNVGNQRFLSDVLPTTEFKVLKKQKKRN----DIPKVNNEEPNLSSELRVNEFNIQM 540
L ++++ S + FK+LKK + N ++ ++ ++ P+ EL+VNE N+Q
Sbjct: 397 LERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQA 456
Query: 541 ISKNIYEQL 567
I + L
Sbjct: 457 IDEESLSDL 465
>BC107493-1|AAI07494.1| 699|Homo sapiens extracellular matrix
protein 2, female organ and adipocyte specific protein.
Length = 699
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 373 LNKVNVGNQRFLSDVLPTTEFKVLKKQKKRN----DIPKVNNEEPNLSSELRVNEFNIQM 540
L ++++ S + FK+LKK + N ++ ++ ++ P+ EL+VNE N+Q
Sbjct: 369 LERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQA 428
Query: 541 ISKNIYEQL 567
I + L
Sbjct: 429 IDEESLSDL 437
>AL157827-4|CAI12589.1| 699|Homo sapiens extracellular matrix
protein 2, female organ and adipocyte specific protein.
Length = 699
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 373 LNKVNVGNQRFLSDVLPTTEFKVLKKQKKRN----DIPKVNNEEPNLSSELRVNEFNIQM 540
L ++++ S + FK+LKK + N ++ ++ ++ P+ EL+VNE N+Q
Sbjct: 369 LERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQA 428
Query: 541 ISKNIYEQL 567
I + L
Sbjct: 429 IDEESLSDL 437
>AL137848-1|CAI16693.1| 699|Homo sapiens extracellular matrix
protein 2, female organ and adipocyte specific protein.
Length = 699
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 373 LNKVNVGNQRFLSDVLPTTEFKVLKKQKKRN----DIPKVNNEEPNLSSELRVNEFNIQM 540
L ++++ S + FK+LKK + N ++ ++ ++ P+ EL+VNE N+Q
Sbjct: 369 LERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQA 428
Query: 541 ISKNIYEQL 567
I + L
Sbjct: 429 IDEESLSDL 437
>AB011792-1|BAA33958.1| 699|Homo sapiens extracellular matrix
protein protein.
Length = 699
Score = 30.7 bits (66), Expect = 5.4
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 373 LNKVNVGNQRFLSDVLPTTEFKVLKKQKKRN----DIPKVNNEEPNLSSELRVNEFNIQM 540
L ++++ S + FK+LKK + N ++ ++ ++ P+ EL+VNE N+Q
Sbjct: 369 LERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQA 428
Query: 541 ISKNIYEQL 567
I + L
Sbjct: 429 IDEESLSDL 437
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 29.9 bits (64), Expect = 9.5
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +1
Query: 277 RAVEKTRVRI*KFRMKKLH--KKIACINLKTHSFLNKVNVGNQRFLSDVLPTTEFKVLKK 450
R +EK RVRI K+LH +K+ + S +KV +R L E +L
Sbjct: 2118 RGIEKLRVRIEADEKKQLHIAEKLKERERENDSLKDKVE-NLERELQMSEENQELVILDA 2176
Query: 451 QKKRNDIPKVNNEEPNLSSELRVNEFNIQMI---SKNIYEQLFKKPSSSPDPEVIKSCQE 621
+ + ++ + + ++ L+V E ++ + +N+ +Q+ +K + + + S +
Sbjct: 2177 ENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFK 2236
Query: 622 SLL 630
SLL
Sbjct: 2237 SLL 2239
>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
protein.
Length = 3210
Score = 29.9 bits (64), Expect = 9.5
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +1
Query: 277 RAVEKTRVRI*KFRMKKLH--KKIACINLKTHSFLNKVNVGNQRFLSDVLPTTEFKVLKK 450
R +EK RVRI K+LH +K+ + S +KV +R L E +L
Sbjct: 2215 RGIEKLRVRIEADEKKQLHIAEKLKERERENDSLKDKVE-NLERELQMSEENQELVILDA 2273
Query: 451 QKKRNDIPKVNNEEPNLSSELRVNEFNIQMI---SKNIYEQLFKKPSSSPDPEVIKSCQE 621
+ + ++ + + ++ L+V E ++ + +N+ +Q+ +K + + + S +
Sbjct: 2274 ENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFK 2333
Query: 622 SLL 630
SLL
Sbjct: 2334 SLL 2336
>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 29.9 bits (64), Expect = 9.5
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +1
Query: 277 RAVEKTRVRI*KFRMKKLH--KKIACINLKTHSFLNKVNVGNQRFLSDVLPTTEFKVLKK 450
R +EK RVRI K+LH +K+ + S +KV +R L E +L
Sbjct: 2119 RGIEKLRVRIEADEKKQLHIAEKLKERERENDSLKDKVE-NLERELQMSEENQELVILDA 2177
Query: 451 QKKRNDIPKVNNEEPNLSSELRVNEFNIQMI---SKNIYEQLFKKPSSSPDPEVIKSCQE 621
+ + ++ + + ++ L+V E ++ + +N+ +Q+ +K + + + S +
Sbjct: 2178 ENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFK 2237
Query: 622 SLL 630
SLL
Sbjct: 2238 SLL 2240
>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 29.9 bits (64), Expect = 9.5
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +1
Query: 277 RAVEKTRVRI*KFRMKKLH--KKIACINLKTHSFLNKVNVGNQRFLSDVLPTTEFKVLKK 450
R +EK RVRI K+LH +K+ + S +KV +R L E +L
Sbjct: 2119 RGIEKLRVRIEADEKKQLHIAEKLKERERENDSLKDKVE-NLERELQMSEENQELVILDA 2177
Query: 451 QKKRNDIPKVNNEEPNLSSELRVNEFNIQMI---SKNIYEQLFKKPSSSPDPEVIKSCQE 621
+ + ++ + + ++ L+V E ++ + +N+ +Q+ +K + + + S +
Sbjct: 2178 ENSKAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFK 2237
Query: 622 SLL 630
SLL
Sbjct: 2238 SLL 2240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,645,832
Number of Sequences: 237096
Number of extensions: 1803297
Number of successful extensions: 4185
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4164
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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