Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K21
         (714 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial ...    49   7e-06
U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase...    49   7e-06
AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p pro...    49   7e-06
AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA...    49   7e-06
AY089594-1|AAL90332.1|  591|Drosophila melanogaster RE18886p pro...    29   4.7  
AE014297-4804|AAF57193.1|  591|Drosophila melanogaster CG2191-PA...    29   4.7  

>U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial DNA
           polymerase catalyticsubunit precursor protein.
          Length = 1145

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
 Frame = +1

Query: 433 FKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLF-KKPSSSPDPEV-- 603
           F+ +K  +K N   K  N E N  +E   N   +QMIS+N++ QLF + P S  + +V  
Sbjct: 26  FRRVKPPQKVNKPKKPENVE-NGPTEYAENLVKVQMISRNLHAQLFPQAPRSISEQQVAS 84

Query: 604 IKSCQESLLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
            K  ++ L RHG+  +  S  + DV LKLP L G +I
Sbjct: 85  AKVYKDELRRHGVDIES-SAPVSDVQLKLPPLRGANI 120


>U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase
           gamma protein.
          Length = 1145

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
 Frame = +1

Query: 433 FKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLF-KKPSSSPDPEV-- 603
           F+ +K  +K N   K  N E N  +E   N   +QMIS+N++ QLF + P S  + +V  
Sbjct: 26  FRRVKPPQKVNKPKKPENVE-NGPTEYAENLVKVQMISRNLHAQLFPQAPRSISEQQVAS 84

Query: 604 IKSCQESLLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
            K  ++ L RHG+  +  S  + DV LKLP L G +I
Sbjct: 85  AKVYKDELRRHGVDIES-SAPVSDVQLKLPALRGANI 120


>AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p
           protein.
          Length = 1145

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
 Frame = +1

Query: 433 FKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLF-KKPSSSPDPEV-- 603
           F+ +K  +K N   K  N E N  +E   N   +QMIS+N++ QLF + P S  + +V  
Sbjct: 26  FRRVKPPQKVNKPKKPENVE-NGPTEYAENLVKVQMISRNLHAQLFPQAPRSISEQQVAS 84

Query: 604 IKSCQESLLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
            K  ++ L RHG+  +  S  + DV LKLP L G +I
Sbjct: 85  AKVYKDELRRHGVDIES-SAPVSDVQLKLPALRGANI 120


>AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA
           protein.
          Length = 1145

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
 Frame = +1

Query: 433 FKVLKKQKKRNDIPKVNNEEPNLSSELRVNEFNIQMISKNIYEQLF-KKPSSSPDPEV-- 603
           F+ +K  +K N   K  N E N  +E   N   +QMIS+N++ QLF + P S  + +V  
Sbjct: 26  FRRVKPPQKVNKPKKPENVE-NGPTEYAENLVKVQMISRNLHAQLFPQAPRSISEQQVAS 84

Query: 604 IKSCQESLLRHGIXYKKCSNYLPDVTLKLPKLXGQDI 714
            K  ++ L RHG+  +  S  + DV LKLP L G +I
Sbjct: 85  AKVYKDELRRHGVDIES-SAPVSDVQLKLPALRGANI 120


>AY089594-1|AAL90332.1|  591|Drosophila melanogaster RE18886p
           protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 557 YIFLEIICILNSLTLNSLDRFGSSLFTFGISFLFFCFFKTLNSVV 423
           Y+ L   C+   ++L SL     SL  FG  F+   FF     +V
Sbjct: 269 YVGLNQSCVQRIVSLPSLGHARRSLVLFGFGFILIMFFNCFTGIV 313


>AE014297-4804|AAF57193.1|  591|Drosophila melanogaster CG2191-PA
           protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 557 YIFLEIICILNSLTLNSLDRFGSSLFTFGISFLFFCFFKTLNSVV 423
           Y+ L   C+   ++L SL     SL  FG  F+   FF     +V
Sbjct: 269 YVGLNQSCVQRIVSLPSLGHARRSLVLFGFGFILIMFFNCFTGIV 313


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,148,168
Number of Sequences: 53049
Number of extensions: 546829
Number of successful extensions: 1641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)