Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K16
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.0  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   7.0  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   7.0  
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    24   9.3  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
 Frame = +3

Query: 93  PNSLSHPAGVEKGL----PSPALCPAGTMNPCASIYKLIQNEAEKLLLCQK 233
           P+S   P G  +G     P P LC  G   PC +         EK  LC K
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTA-------TVEKFCLCGK 318


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 3   AGRYSKN*LSQKCTNSRFYSLFWLAS*WPKPNSLSHPAGVEKGLP 137
           A  Y    L +KC  + F    W    W  PN LS   GVE  +P
Sbjct: 757 ASEYMDTNLGKKCPENAFQG--WT---WQFPNDLSIMNGVEDYIP 796


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 221 QEFFSFILNKFINRRTRIHRSCRTQCRRWQPF 126
           Q  FS I +K I    R+ R C+ + +R+ PF
Sbjct: 112 QTVFSEISSKSIPLYNRMKRLCQEKTKRFTPF 143


>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 177 HKDSSFLQDTVPAMAALFPPQLDVKVSWASAIMKQAKTRNRIVNLYIFG*VSSLSIG 7
           ++ S F   ++ A  ++ P      V+   AI    KTR R  N  I+G +  L  G
Sbjct: 45  NEPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIRELPSG 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,528
Number of Sequences: 5004
Number of extensions: 31570
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)