Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K15
         (836 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.74 
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   3.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   4.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.9  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   6.9  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.1  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 18/67 (26%), Positives = 24/67 (35%)
 Frame = +1

Query: 391 LHQAHHRYRRHPLHLVRRQTLAQRLLHLRAVQDLARRQGLHHRRTGHHLSRVRQAEAHVN 570
           +HQ HH+       L     +  R   L    D   +  LHH    HHL +        N
Sbjct: 313 MHQQHHQQNMSHEEL---SAMVNRCHPLSLSSD--HQAMLHHNPMSHHLKQEPSGFTSSN 367

Query: 571 TPVSLQR 591
            P S+ R
Sbjct: 368 HPFSINR 374


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 642 SYINCIACEGWSDARAEALKRD 577
           +YI+CI  +G      E LKRD
Sbjct: 42  NYIDCILGKGKCTPEGEELKRD 63


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 376 QALHFLHQAHHRYRRHPLH 432
           Q+++  H  HH   +HP H
Sbjct: 160 QSMNNHHMGHHMQEQHPQH 178


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 376 QALHFLHQAHHRYRRHPLH 432
           Q+++  H  HH   +HP H
Sbjct: 162 QSMNNHHMGHHMQEQHPQH 180


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
 Frame = +2

Query: 278 FTCTNCNTS------LAGQRFTSRDEKPY-CAEC 358
           FTC  CN S      L     T   EKP+ C EC
Sbjct: 135 FTCEVCNRSFGYKHVLQNHERTHTGEKPFECQEC 168


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 127 RVTCRQRSRSTDXCHCLGLDSR 62
           R +CR  S +T  CH L +  R
Sbjct: 286 RYSCRDCSYATKYCHSLKIHLR 307


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 127 RVTCRQRSRSTDXCHCLGLDSR 62
           R +CR  S +T  CH L +  R
Sbjct: 44  RYSCRDCSYATKYCHSLKIHLR 65


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
 Frame = +2

Query: 278 FTCTNCNT------SLAGQRFTSRDEKPYCAECFGELFAKR 382
           F C  CN       +L     T  DE+PY  +  G+ F ++
Sbjct: 80  FICKYCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQ 120


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 293 CNTSLAGQRFTSRDE 337
           CN    G+RFT  DE
Sbjct: 347 CNWLFCGKRFTRSDE 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,059
Number of Sequences: 336
Number of extensions: 3069
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)