Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_K13
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 29 0.75
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.3
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.3
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.0
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.0
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.3
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 26 5.3
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 26 7.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 26 7.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 26 7.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 26 7.0
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 29.1 bits (62), Expect = 0.75
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 335 YTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPI 484
YT P L CD+G+K T I F +IL ++ + I FL V+PI
Sbjct: 150 YTYP--LACDKGKKTLSTSIAIEFFQILLKDTFPLLD--DWIAFLKVSPI 195
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 303 IYQNLNMVRPSTHYPTFYFATEERKRI 383
I+ L +V+PS +P FY +EE+ +I
Sbjct: 1450 IHYVLKLVKPSKFFPLFYSDSEEKGKI 1476
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 437 WFNTSKMIVFLHVNPITMEDKTPVYAALNKNKMYLRTYGKKI 562
W T K +HV+ + +PV AL+ + +Y+RT + I
Sbjct: 892 WLTTLKKPQSIHVSGRFPQVSSPVNTALSNSLLYIRTLSRVI 933
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 745 KFIL*K*TILYYTSHDNQLWSFFQNFKHFCSIFRLTEYNI 626
KF L + IL +SHD+QL+S SI R ++ +I
Sbjct: 195 KFALQRKRILLISSHDDQLYSIIDMIVRLSSIKRSSDASI 234
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 557 KIVSLATKGTRYEVVNELFTS-HQNIIFGQPENAAKMFKIL 676
+I +A +G ++ ++ L H NII+G PE K I+
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNII 99
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 157 STTTKTENVIIKKNSFRASSMFSHSKEVSREN 252
ST TEN ++KN+F+ + F+ + ++ N
Sbjct: 106 STRKDTENESLRKNNFKRRTQFAFTGRATKSN 137
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 557 KIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKAPQLVVMAGV 712
K++S KGTR+EV + + T I++ + A + K + +A L+++ V
Sbjct: 283 KVLSATWKGTRFEVQSVIRTVSDKILY---DKAVPLEKRINRANALLMIGQV 331
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 448 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 359
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 448 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 359
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 448 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 359
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 448 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 359
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,601
Number of Sequences: 5004
Number of extensions: 71383
Number of successful extensions: 210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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