Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K13
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0202 + 1464905-1465423                                           29   4.2  
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           29   5.5  
07_03_1660 + 28435230-28435331,28435518-28435748                       28   7.3  

>07_01_0202 + 1464905-1465423
          Length = 172

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 780 AKXKVGSWLNSKSSFFESRRSCTTPAMTTNCGAFFKIL 667
           A   VG W+  K+S+  S  +CT  A+  +CG + +I+
Sbjct: 99  AADAVGLWMEEKASYVYSSNTCTKGAL-LDCGHYTQIV 135


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 255 IFKGQGCLISNGSYYLIYQNLNMVRPSTHYPT 350
           I+KG+    S+G +  + Q LN   PS+H P+
Sbjct: 372 IYKGKSSAQSSGEFKRLVQTLNEKPPSSHVPS 403


>07_03_1660 + 28435230-28435331,28435518-28435748
          Length = 110

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/65 (21%), Positives = 30/65 (46%)
 Frame = +2

Query: 341 LPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPITMEDKTPVYAAL 520
           +P F+  D      K E+ N F  +L  +CL W + + ++  LH+      +++ +    
Sbjct: 35  IPGFM--DLEYATRKKEMANKFRVMLLIKCLNWMDCNMLLDNLHLTEAAFRNRSMIRKCT 92

Query: 521 NKNKM 535
            + K+
Sbjct: 93  GEGKI 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,530,895
Number of Sequences: 37544
Number of extensions: 387947
Number of successful extensions: 965
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)