Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_K13
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88175-3|AAB42280.1| 295|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr... 31 0.93
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 29 2.8
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 29 2.8
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 28 6.6
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 28 6.6
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 28 6.6
U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of p... 28 8.7
AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of... 28 8.7
AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of... 28 8.7
>U88175-3|AAB42280.1| 295|Caenorhabditis elegans Hypothetical
protein F21F3.3 protein.
Length = 295
Score = 31.9 bits (69), Expect = 0.53
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 721 ILYYTSHDNQLWSFFQNFKHFCSIFRLTEY 632
++Y +H+ +LW +F + F S+F +E+
Sbjct: 92 LVYTVAHEGELWEYFSRYFLFLSVFHFSEF 121
>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
protein C14C10.4 protein.
Length = 1058
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 527 NKMYLRTYGKKIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKA 685
N+M KIV L R ++ NE T +N++ PE A + K+ K A
Sbjct: 632 NEMITLDMAAKIVQLLEDDPRVQLNNEELTDARNVLKSSPEKAELLGKLRKSA 684
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 554 KKIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKAPQLVVMAGVVQDRLLS 733
KK L +Y++V E++ H F PE +K+ +L++ +L+ AG + L S
Sbjct: 463 KKHYMLKNPDEKYDIVPEIWEGHNLADFVDPEIQSKLENLLRE-EELLEQAGEYESDLDS 521
Query: 734 KNE 742
+E
Sbjct: 522 DDE 524
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 554 KKIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKAPQLVVMAGVVQDRLLS 733
KK L +Y++V E++ H F PE +K+ +L++ +L+ AG + L S
Sbjct: 463 KKHYMLKNPDEKYDIVPEIWEGHNLADFVDPEIQSKLENLLRE-EELLEQAGEYESDLDS 521
Query: 734 KNE 742
+E
Sbjct: 522 DDE 524
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 242 RGKINIQRPRLPHFERQLLLDLSKPKYGPPKY--TLPDFLLCD 364
R I + R R PH +Q+ S+PK+ PP + P+ LL D
Sbjct: 670 RRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMD 712
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 242 RGKINIQRPRLPHFERQLLLDLSKPKYGPPKY--TLPDFLLCD 364
R I + R R PH +Q+ S+PK+ PP + P+ LL D
Sbjct: 670 RRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMD 712
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 242 RGKINIQRPRLPHFERQLLLDLSKPKYGPPKY--TLPDFLLCD 364
R I + R R PH +Q+ S+PK+ PP + P+ LL D
Sbjct: 670 RRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMD 712
>U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of
presenilin defectprotein 1 protein.
Length = 558
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 356 LCDR-GEKKNKTEIDNPFERILARECLEWFN 445
+CD GEK +I+N R R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306
>AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of
presenilin 1 protein.
Length = 558
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 356 LCDR-GEKKNKTEIDNPFERILARECLEWFN 445
+CD GEK +I+N R R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306
>AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of
presenilin defect protein.
Length = 558
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 356 LCDR-GEKKNKTEIDNPFERILARECLEWFN 445
+CD GEK +I+N R R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,998,004
Number of Sequences: 27780
Number of extensions: 394454
Number of successful extensions: 1145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -