Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K10
         (730 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC053863-1|AAH53863.1|  709|Homo sapiens YTH domain containing 1...    31   4.2  
BC041119-1|AAH41119.1|  727|Homo sapiens YTH domain containing 1...    31   4.2  
AK056430-1|BAB71181.1|  658|Homo sapiens protein ( Homo sapiens ...    31   4.2  
AC074378-1|AAY41024.1|  658|Homo sapiens unknown protein.              31   4.2  

>BC053863-1|AAH53863.1|  709|Homo sapiens YTH domain containing 1
           protein.
          Length = 709

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
 Frame = +2

Query: 407 SPAIRQEID--SNLSSPNIKLEVNTE----DHKE-ESGQYSLVSDNLETSTENNEDFPKF 565
           S  I  E+D  ++ SS + K EVN+E    DH+   SG      +N E   E  E+  + 
Sbjct: 152 SERIGLEVDRRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEE 211

Query: 566 DEVADVDVIIEESVGEPNDITQIQDDSSLDYFPEIDDSYRFASVDKVE 709
           DE  + D   +E V E  +  + +++   +   E ++ Y     D+ E
Sbjct: 212 DEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKE 259


>BC041119-1|AAH41119.1|  727|Homo sapiens YTH domain containing 1
           protein.
          Length = 727

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
 Frame = +2

Query: 407 SPAIRQEID--SNLSSPNIKLEVNTE----DHKE-ESGQYSLVSDNLETSTENNEDFPKF 565
           S  I  E+D  ++ SS + K EVN+E    DH+   SG      +N E   E  E+  + 
Sbjct: 152 SERIGLEVDRRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEE 211

Query: 566 DEVADVDVIIEESVGEPNDITQIQDDSSLDYFPEIDDSYRFASVDKVE 709
           DE  + D   +E V E  +  + +++   +   E ++ Y     D+ E
Sbjct: 212 DEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKE 259


>AK056430-1|BAB71181.1|  658|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31868 fis, clone NT2RP7001962, highly similar to
           Rattus norvegicus YT521 mRNA for RNA splicing-related
           protein. ).
          Length = 658

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
 Frame = +2

Query: 407 SPAIRQEID--SNLSSPNIKLEVNTE----DHKE-ESGQYSLVSDNLETSTENNEDFPKF 565
           S  I  E+D  ++ SS + K EVN+E    DH+   SG      +N E   E  E+  + 
Sbjct: 101 SERIGLEVDRRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEE 160

Query: 566 DEVADVDVIIEESVGEPNDITQIQDDSSLDYFPEIDDSYRFASVDKVE 709
           DE  + D   +E V E  +  + +++   +   E ++ Y     D+ E
Sbjct: 161 DEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKE 208


>AC074378-1|AAY41024.1|  658|Homo sapiens unknown protein.
          Length = 658

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
 Frame = +2

Query: 407 SPAIRQEID--SNLSSPNIKLEVNTE----DHKE-ESGQYSLVSDNLETSTENNEDFPKF 565
           S  I  E+D  ++ SS + K EVN+E    DH+   SG      +N E   E  E+  + 
Sbjct: 101 SERIGLEVDRRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEE 160

Query: 566 DEVADVDVIIEESVGEPNDITQIQDDSSLDYFPEIDDSYRFASVDKVE 709
           DE  + D   +E V E  +  + +++   +   E ++ Y     D+ E
Sbjct: 161 DEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKE 208


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,796,733
Number of Sequences: 237096
Number of extensions: 1771172
Number of successful extensions: 3508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3508
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)