Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K09
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    93   4e-20
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   4.4  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 48/86 (55%), Positives = 58/86 (67%)
 Frame = +3

Query: 96  SKFDQAAANVXXLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 275
           S F+QAAA+V  LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW +L
Sbjct: 3   STFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEEL 61

Query: 276 AGTSKEDAQKAYIEIVEGLIASIGLK 353
            G SKEDA   YI  V+ L    G+K
Sbjct: 62  KGKSKEDAASEYISFVDELKTKYGMK 87


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -3

Query: 539 FMKSI*ICFLKKKTFQTKM*NKDGVKKV*CAMMMRKIARIYIVHSIMKI 393
           F+ S+ +CF  +   Q      D  K +  A+ ++ + ++ IVH++ K+
Sbjct: 243 FIASVLVCFWDESNHQEIANISDMWKTIRAALSLKNMRQLLIVHTLGKV 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,994
Number of Sequences: 5004
Number of extensions: 47911
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)