Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_K08
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 611 GNFYTFSLIFFNKYNLQVNFNF*KPLLV 528
           G+ +T ++I F++YN+ V     KPL +
Sbjct: 138 GSIWTMTMIAFDRYNVIVKGLSGKPLSI 165


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 611 GNFYTFSLIFFNKYNLQVNFNF*KPLLV 528
           G+ +T ++I F++YN+ V     KPL +
Sbjct: 104 GSIWTMTMIAFDRYNVIVKGLSGKPLSI 131


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 611 GNFYTFSLIFFNKYNLQVNFNF*KPLLV 528
           G+ +T ++I F++YN+ V     KPL +
Sbjct: 14  GSIWTMTMIAFDRYNVIVKGLSGKPLSI 41


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 640 YVFKEKKKTLEIFTPFRLFFLTNII 566
           Y+  E  K ++I+TP  L  L N+I
Sbjct: 344 YLIDEYGKKIDIYTPEGLNMLGNVI 368


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 640 YVFKEKKKTLEIFTPFRLFFLTNII 566
           Y+  E  K ++I+TP  L  L N+I
Sbjct: 344 YLIDEYGKKIDIYTPEGLNMLGNVI 368


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 324 YQYNNGY*VENNTRRKR 374
           Y YNN Y   NN   K+
Sbjct: 98  YNYNNKYNYNNNNYNKK 114


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 473 LNYDTQFNKISKNKHFLATLI*KSLVVTHNF 381
           L Y  + N+I KN++ LA       +V ++F
Sbjct: 364 LAYSGRMNRIHKNEYMLALSNRMQKIVNNDF 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,726
Number of Sequences: 438
Number of extensions: 4666
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)